libbwa-dev_0.7.17-3~ubuntu0.19.04.1_amd64.deb


Advertisement

Description

libbwa-dev - Burrows-Wheeler Aligner source files

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Updates Universe amd64
Package filename libbwa-dev_0.7.17-3~ubuntu0.19.04.1_amd64.deb
Package name libbwa-dev
Package version 0.7.17
Package release 3~ubuntu0.19.04.1
Package architecture amd64
Package type deb
Category universe/libdevel
Homepage http://bio-bwa.sourceforge.net/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 110.74 KB
Installed size 364.00 KB
BWA is a software package for mapping low-divergent sequences against
a large reference genome, such as the human genome. It consists of
three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first
algorithm is designed for Illumina sequence reads up to 100bp, while
the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM
and BWA-SW share similar features such as long-read support and split
alignment, but BWA-MEM, which is the latest, is generally recommended
for high-quality queries as it is faster and more accurate. BWA-MEM
also has better performance than BWA-backtrack for 70-100bp Illumina
reads.
This package contains the source files for use in other programs.

Alternatives

Package Version Architecture Repository
libbwa-dev_0.7.17-2_amd64.deb 0.7.17 amd64 Ubuntu Universe
libbwa-dev - - -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package libbwa-dev_0.7.17-3~ubuntu0.19.04.1_amd64.deb
Source Package bwa

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbwa-dev deb package:
    # sudo apt-get install libbwa-dev

Changelog

2019-08-05 - Mike Salvatore <mike.salvatore@canonical.com>
bwa (0.7.17-3~ubuntu0.19.04.1) disco-security; urgency=medium
* Sync from debian
2019-03-30 - Dylan Aïssi <daissi@debian.org>
bwa (0.7.17-3) unstable; urgency=medium
* Team upload.
[ Dylan Aïssi ]
* Add patch from upstream to fix CVE-2019-10269.
(Closes: #926014)
[ Jelmer Vernooij ]
* Trim trailing whitespace.
2018-10-19 - Andreas Tille <tille@debian.org>
bwa (0.7.17-2) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Fix wrong-path-for-interpreter
2017-11-13 - Andreas Tille <tille@debian.org>
bwa (0.7.17-1) unstable; urgency=medium
* debian/upstream/metadata: RRID -> SciCrunch
[ Pointed out by John Marshall ]
* debian/patches/series:
- check_for_nan.patch superseded by upstream's
bcb475cd033b3641d2de19ad6fb70da7bdd54f77
- commenting issue behind fix_heap_block_overrun is analysed in
https://github.com/lh3/bwa/issues/146
[ Andreas Tille ]
* debhelper 10
* Standards-Version: 4.1.1
2017-08-07 - Steffen Moeller <moeller@debian.org>
bwa (0.7.16-1) unstable; urgency=medium
* Team upload.
* debian/control: Policy bump tp 4.1.0
* debian/upstream/metadata: Add references to registries.
2017-06-30 - Nadiya Sitdykova <rovenskasa@gmail.com>
bwa (0.7.15-5) unstable; urgency=medium
* Team upload.
[Nadiya Sitdykova]
* Add patch to fix heap block overrun 
* Add patch with workaround for incorrect implicit type casting
(resolves upstream issue #108) 
* Remove patch with workaround for issue #108
* Add patch that checks computed avg and std for nan
(straitforward fix for upstream issue #108)
Closes: #853859
* Add patch that fixes printing of unsigned counts
[Steffen Moeller]
* debian/upstream/metadata: Added bio.tools entry
2017-03-16 - Andreas Tille <tille@debian.org>
bwa (0.7.15-4) UNRELEASED; urgency=medium
* Debugging (see deactivated patch debian/patches/debug.patch that tries
to track down upstream issue #108)
==> Any help would be welcome!
* debian/upstream/metadata: Added RRID and SEQwiki entries (Steffen Moeller)
2017-01-27 - Andreas Tille <tille@debian.org>
bwa (0.7.15-3) unstable; urgency=medium
* bwa/kseq.h is used by SeqLib so include this into libbwa-dev package
2016-06-26 - Canberk Koç <canberkkoc@gmail.com>
bwa (0.7.15-2) unstable; urgency=medium
* Team upload
* Added testsuite
* debian/examples directory added
2016-06-03 - Andreas Tille <tille@debian.org>
bwa (0.7.15-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* better hardening

See Also

Package Description
libc-client2007e-dev_2007f~dfsg-5ubuntu0.19.04.1_amd64.deb c-client library for mail protocols - development files
libc-client2007e_2007f~dfsg-5ubuntu0.19.04.1_amd64.deb c-client library for mail protocols - library files
libc-icap-mod-contentfiltering_0.5.3-1build0.1_amd64.deb Content filtering Service for c-icap
libc-icap-mod-urlcheck_0.5.3-1build0.1_amd64.deb URL Check Service for c-icap
libc-icap-mod-virus-scan_0.5.3-1build0.1_amd64.deb Antivirus Service for c-icap
libcephfs-java_13.2.6-0ubuntu0.19.04.4_all.deb Java library for the Ceph File System
libcephfs-jni_13.2.6-0ubuntu0.19.04.4_amd64.deb Java Native Interface library for CephFS Java bindings
libdb5.3-tcl_5.3.28+dfsg1-0.5ubuntu0.1_amd64.deb Berkeley v5.3 Database Libraries for Tcl [module]
libdpdk-dev_18.11.2-1ubuntu0.19.04.1_amd64.deb Data Plane Development Kit (basic development files)
libflatpak-dev_1.2.5-0ubuntu0.1_amd64.deb Application deployment framework for desktop apps (development)
libflatpak-doc_1.2.5-0ubuntu0.1_all.deb Application deployment framework for desktop apps (documentation)
libflatpak0_1.2.5-0ubuntu0.1_amd64.deb Application deployment framework for desktop apps (library)
libflightcrew-dev_0.7.2+dfsg-13ubuntu0.19.04.1_all.deb C++ library development filesfor epub validation
libflightcrew0v5_0.7.2+dfsg-13ubuntu0.19.04.1_amd64.deb C++ library for epub validation
libfm-qt-dev_0.14.1-0ubuntu2.1_amd64.deb file management support library for pcmanfm-qt (development files)
Advertisement
Advertisement