python-cogent-doc_1.9-14_all.deb


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Description

python-cogent-doc - docs for python-cogent

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename python-cogent-doc_1.9-14_all.deb
Package name python-cogent-doc
Package version 1.9
Package release 14
Package architecture all
Package type deb
Category universe/doc
Homepage http://pycogent.org/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 559.51 KB
Installed size 4.35 MB
PyCogent is a software library for genomic biology.
It is distinguished by many unique built-in capabilities (such as true codon
alignment) and the frequent addition of entirely new methods for the analysis
of genomic data.
This package contains documentation and examples.

Alternatives

Package Version Architecture Repository
python-cogent-doc_1.9-14_all.deb 1.9 all Ubuntu Universe
python-cogent-doc - - -

Requires

Name Value
libjs-jquery -
libjs-underscore -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package python-cogent-doc_1.9-14_all.deb
Source Package python-cogent

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-cogent-doc deb package:
    # sudo apt-get install python-cogent-doc

Files

Path
/usr/share/doc-base/python-cogent-doc
/usr/share/doc/python-cogent-doc/changelog.Debian.gz
/usr/share/doc/python-cogent-doc/copyright
/usr/share/doc/python-cogent-doc/html/.buildinfo
/usr/share/doc/python-cogent-doc/html/COGENT_LICENSE.html
/usr/share/doc/python-cogent-doc/html/README.html
/usr/share/doc/python-cogent-doc/html/coding_guidelines.html
/usr/share/doc/python-cogent-doc/html/data_file_links.html
/usr/share/doc/python-cogent-doc/html/developer_notes.html
/usr/share/doc/python-cogent-doc/html/genindex.html
/usr/share/doc/python-cogent-doc/html/index.html
/usr/share/doc/python-cogent-doc/html/install.html
/usr/share/doc/python-cogent-doc/html/licenses.html
/usr/share/doc/python-cogent-doc/html/objects.inv
/usr/share/doc/python-cogent-doc/html/scripting_guidelines.html
/usr/share/doc/python-cogent-doc/html/search.html
/usr/share/doc/python-cogent-doc/html/searchindex.js
/usr/share/doc/python-cogent-doc/html/_downloads/4TSV.pdb
/usr/share/doc/python-cogent-doc/html/_downloads/abglobin_aa.phylip
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/usr/share/doc/python-cogent-doc/html/_downloads/inseqs.fasta
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/usr/share/doc/python-cogent-doc/html/_downloads/refseqs_protein.fasta
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/usr/share/doc/python-cogent-doc/html/_sources/COGENT_LICENSE.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/README.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/coding_guidelines.rst.txt
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/usr/share/doc/python-cogent-doc/html/_sources/index.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/install.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/licenses.rst.txt
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/usr/share/doc/python-cogent-doc/html/_sources/examples/alignment_app_controllers.rst.txt
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/usr/share/doc/python-cogent-doc/html/_sources/examples/building_and_using_an_application_controller.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/calculate_UPGMA_cluster.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/calculate_neigbourjoining_tree.rst.txt
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/usr/share/doc/python-cogent-doc/html/_sources/examples/codon_models.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/coevolution.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/complete_seq_features.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/draw_dendrogram.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/draw_dotplot.rst.txt
/usr/share/doc/python-cogent-doc/html/_sources/examples/empirical_protein_models.rst.txt
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/usr/share/doc/python-cogent-doc/html/_sources/examples/genetic_code_aa_index.rst.txt
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/usr/share/doc/python-cogent-doc/html/cookbook/moltypesequence.html
/usr/share/doc/python-cogent-doc/html/cookbook/multivariate_data_analysis.html
/usr/share/doc/python-cogent-doc/html/cookbook/parallel_tasks_with_mpi.html
/usr/share/doc/python-cogent-doc/html/cookbook/parallel_tasks_with_multiprocess.html
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/usr/share/doc/python-cogent-doc/html/cookbook/using_likelihood_to_perform_evolutionary_analyses.html
/usr/share/doc/python-cogent-doc/html/examples/align_codons_to_protein.html
/usr/share/doc/python-cogent-doc/html/examples/alignment_app_controllers.html
/usr/share/doc/python-cogent-doc/html/examples/aln_profile.html
/usr/share/doc/python-cogent-doc/html/examples/application_controller_framework.html
/usr/share/doc/python-cogent-doc/html/examples/building_and_using_an_application_controller.html
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/usr/share/doc/python-cogent-doc/html/examples/complete_seq_features.html
/usr/share/doc/python-cogent-doc/html/examples/draw_dendrogram.html
/usr/share/doc/python-cogent-doc/html/examples/draw_dotplot.html
/usr/share/doc/python-cogent-doc/html/examples/empirical_protein_models.html
/usr/share/doc/python-cogent-doc/html/examples/entity_selection.html
/usr/share/doc/python-cogent-doc/html/examples/estimate_startingpoint.html
/usr/share/doc/python-cogent-doc/html/examples/generating_app_commandlines.html
/usr/share/doc/python-cogent-doc/html/examples/genetic_code_aa_index.html
/usr/share/doc/python-cogent-doc/html/examples/goodness_of_fit.html
/usr/share/doc/python-cogent-doc/html/examples/handling_3dstructures.html
/usr/share/doc/python-cogent-doc/html/examples/handling_tabular_data.html
/usr/share/doc/python-cogent-doc/html/examples/hmm_par_heterogeneity.html
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/usr/share/doc/python-cogent-doc/html/examples/maketree_from_proteinseqs.html
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/usr/share/doc/python-cogent-doc/html/examples/motif_results.html
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/usr/share/doc/python-cogent-doc/html/examples/parametric_bootstrap.html
/usr/share/doc/python-cogent-doc/html/examples/perform_PCoA_analysis.html
/usr/share/doc/python-cogent-doc/html/examples/perform_nmds.html
/usr/share/doc/python-cogent-doc/html/examples/period_estimation.html
/usr/share/doc/python-cogent-doc/html/examples/phylo_by_ls.html
/usr/share/doc/python-cogent-doc/html/examples/phylogeny_app_controllers.html
/usr/share/doc/python-cogent-doc/html/examples/query_ensembl.html
/usr/share/doc/python-cogent-doc/html/examples/query_ncbi.html
/usr/share/doc/python-cogent-doc/html/examples/rate_heterogeneity.html
/usr/share/doc/python-cogent-doc/html/examples/relative_rate.html
/usr/share/doc/python-cogent-doc/html/examples/reuse_results.html
/usr/share/doc/python-cogent-doc/html/examples/reverse_complement.html
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/usr/share/doc/python-cogent-doc/html/examples/seq_features.html
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Changelog

2019-01-10 - Andreas Tille <tille@debian.org>
python-cogent (1.9-14) unstable; urgency=medium
* Enable building with sphinx1.8
Closes: #918829
* Drop Thorsten Alteholz <debian@alteholz.de> since no commits since
more than five years - thanks for your previous work Thorsten
* Standards-Version: 4.3.0
* rename debian/tests/control.autodep8 to debian/tests/control
2018-12-17 - Andreas Tille <tille@debian.org>
python-cogent (1.9-13) unstable; urgency=medium
* Ignore test with matplotlib 2.2.3 where a warning message is different
than expected
Closes: #915908
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/rules
* Build-Depends: s/python-sphinx/python3-sphinx/
2018-06-06 - Andreas Tille <tille@debian.org>
python-cogent (1.9-12) unstable; urgency=medium
* Add registry data
* Testsuite: autopkgtest-pkg-python
* honor "nocheck" in DEB_BUILD_OPTIONS
Closes: #898334
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* Fix suite fails with latest matplotlib
Closes: #899205
* Fix privacy issue in doc
* Drop obsolete file debian/pyversions
* Drop unneeded get-orig-source target
* Do not parse d/changelog
* Rename debian/tests/control to debian/tests/control.autodep8
* Remove useless doctree files
2017-06-16 - Andreas Tille <tille@debian.org>
python-cogent (1.9-11) unstable; urgency=medium
* Exclude test_format.test_pdb_color.PdbColorTests for s390x
Closes: #864894
2017-06-15 - Naidya Sitdykova <rovenskasa@gmail.com>
python-cogent (1.9-10) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite (without tests known to fail)
[ Andreas Tille ]
* Move packaging from SVN to Git
* Fix test checking path to ls
2016-12-20 - Andreas Tille <tille@debian.org>
python-cogent (1.9-9) unstable; urgency=medium
* Skip test with incompatibilities to Numpy 1.12.0~b1
Closes: #848746
2016-12-06 - Andreas Tille <tille@debian.org>
python-cogent (1.9-8) unstable; urgency=medium
* Skip another test to enable build on mips
2016-12-05 - Andreas Tille <tille@debian.org>
python-cogent (1.9-7) unstable; urgency=medium
* Skip more tests to enable build on mips & mips64el
* Skip tests that are not working any more since ncbi-tools6 >=6.1.20160908-1
Closes: #847082
2016-11-30 - Andreas Tille <tille@debian.org>
python-cogent (1.9-6) unstable; urgency=medium
* Skip some tests that do not create reproducible results at package
build time
Closes: #846078
2016-11-29 - Andreas Tille <tille@debian.org>
python-cogent (1.9-5) unstable; urgency=medium
* Update d/README.Debian with todo list
* debhelper 10
* d/watch: version=4
* add verbosity to unit tests to enable tracking down #846078

See Also

Package Description
python-cogent_1.9-14_amd64.deb framework for genomic biology
python-collada_0.4-3_all.deb Python module for creating, editing and loading COLLADA
python-coloredlogs_7.3-1_all.deb colored terminal output for Python 2's logging module
python-colorlog_4.0.1-1_all.deb formatter to use with the logging module of Python 2
python-colormap_1.0.2-1_all.deb ease manipulation of matplotlib colormaps and color codecs (Python 2)
python-colorspacious_1.1.2-1_all.deb library for doing colorspace conversions - Python 2.X
python-colour_0.1.5-1_all.deb converts and manipulates various color representation - Python 2.X
python-comedilib_0.11.0-1_amd64.deb Python wrapper for Comedilib
python-commando_1.0.0-0.2_all.deb wrapper for argparse to define declaratively (Python 2)
python-commonmark-bkrs-doc_0.5.4+ds-2_all.deb Python parser for the CommonMark Markdown spec -- doc
python-commonmark-bkrs_0.5.4+ds-2_all.deb Python parser for the CommonMark Markdown spec -- Python
python-concurrent.futures_3.2.0-2_all.deb backport of concurrent.futures package from Python 3.2
python-confget_2.2.0-3_all.deb read variables from INI-style configuration files - Python 2.x library
python-configargparse_0.13.0-1_all.deb replacement for argparse with config files and environment variables (Python 2)
python-configglue_1.1.2-0ubuntu3_all.deb Glues together optparse.OptionParser and ConfigParser.ConfigParser
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