python-cobra-data_0.14.2-2_all.deb


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Description

python-cobra-data - constraint-based modeling of biological networks (data)

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename python-cobra-data_0.14.2-2_all.deb
Package name python-cobra-data
Package version 0.14.2
Package release 2
Package architecture all
Package type deb
Category universe/python
Homepage http://opencobra.github.io/cobrapy/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 844.75 KB
Installed size 10.42 MB
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
This package provides required and sample data files.

Alternatives

Package Version Architecture Repository
python-cobra-data_0.14.2-2_all.deb 0.14.2 all Ubuntu Universe
python-cobra-data - - -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package python-cobra-data_0.14.2-2_all.deb
Source Package python-cobra

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-cobra-data deb package:
    # sudo apt-get install python-cobra-data

Files

Path
/usr/share/doc/python-cobra-data/changelog.Debian.gz
/usr/share/doc/python-cobra-data/copyright
/usr/share/lintian/overrides/python-cobra-data
/usr/share/python-cobra/data/iJO1366.pickle
/usr/share/python-cobra/data/iJO1366.xml
/usr/share/python-cobra/data/invalid0.xml
/usr/share/python-cobra/data/invalid1.xml
/usr/share/python-cobra/data/invalid2.xml
/usr/share/python-cobra/data/mini.json
/usr/share/python-cobra/data/mini.mat
/usr/share/python-cobra/data/mini.pickle
/usr/share/python-cobra/data/mini.yml
/usr/share/python-cobra/data/mini_cobra.xml
/usr/share/python-cobra/data/mini_fbc1.xml
/usr/share/python-cobra/data/mini_fbc2.xml
/usr/share/python-cobra/data/mini_fbc2.xml.bz2
/usr/share/python-cobra/data/mini_fbc2.xml.gz
/usr/share/python-cobra/data/raven.mat
/usr/share/python-cobra/data/raven.pickle
/usr/share/python-cobra/data/salmonella.genes
/usr/share/python-cobra/data/salmonella.media
/usr/share/python-cobra/data/salmonella.pickle
/usr/share/python-cobra/data/salmonella.xml
/usr/share/python-cobra/data/textbook.xml.gz
/usr/share/python-cobra/data/textbook_fva.json
/usr/share/python-cobra/data/textbook_pfba_fva.json
/usr/share/python-cobra/data/textbook_solution.pickle

Changelog

2019-02-16 - Liubov Chuprikova <chuprikovalv@gmail.com>
python-cobra (0.14.2-2) unstable; urgency=medium
* Team upload.
* Set correct exit return for autopkgtest
Closes: #912586
* Remove unused or redundant test dependencies
2019-02-04 - Andreas Tille <tille@debian.org>
python-cobra (0.14.2-1) unstable; urgency=medium
* Team upload.
* Do not install __pycache__
* debhelper 12
* Standards-Version: 4.3.0
* rename debian/tests/control.autodep8 to debian/tests/control
* Enable python3-sbml
* Build-/Test-Depends: python3-simplejson
2018-12-18 - Andreas Tille <tille@debian.org>
python-cobra (0.14.1-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Versioned Depends: python3-pipdeptree (>= 0.13.1)
(see https://github.com/opencobra/cobrapy/issues/780)
Closes: #916706
* Add missing Recommends and Test-Depends
2018-11-01 - Andreas Tille <tille@debian.org>
python-cobra (0.13.4-2) unstable; urgency=medium
[ Matthias Klose ]
* Team upload
* Add python3-pytest-benchmark to the autopkg test dependencies.
Closes: #912574
[ Andreas Tille ]
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
2018-10-17 - Andreas Tille <tille@debian.org>
python-cobra (0.13.4-1) unstable; urgency=medium
* Team upload.
[ Afif Elghraoui ]
* New upstream version
Closes: #904709
* Update dependencies
* Refresh patch
* Drop obsolete patch
[ Andreas Tille ]
* Standards-Version: 4.2.1
* Point Vcs-fields to Salsa
* debhelper 11
* cme fix dpkg-control
* Build-Depends: python*-requests, python*-pip
* Drop failing test TestCobraFluxSampling.test_fixed_seed
* Rename debian/tests/control to control.autodep8
* Testsuite: autopkgtest-pkg-python
* Drop Python2 package since it has no reverse dependencies
(as well as autopkgtest of Python2 version)
* Build-Depends: python3-depinfo, python3-pipdeptree
* Drop failing test: test_show_versions (needs further investigation
with upstream)
* Silence lintian about wrong Python version of data file
2017-01-25 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.9-1) unstable; urgency=medium
* New upstream release
* Refresh patch
2016-11-29 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.6-1) unstable; urgency=medium
* Imported Upstream version 0.5.6
* Update packaging to accommodate change in test suite framework
- include a workaround for #846045 (in pytest-benchmark) to be able
to run tests without pytest-benchmark available.
* d/tests/Makefile: update test script to accommodate return code change
2016-11-07 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.4-1) unstable; urgency=medium
* Imported Upstream version 0.5.4
* Update upstream contact
2016-10-21 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.2-1) unstable; urgency=medium
* Drop patch applied upstream
* Imported Upstream version 0.5.2
* Update docs installation
* Remove unused lintian overrides
2016-07-17 - Afif Elghraoui <afif@debian.org>
python-cobra (0.4.2~b1-1) unstable; urgency=medium
* Imported Upstream version 0.4.2~b1
* Refresh patches
* Use Make to drive autopkgtests and document some rationale
* Clean up d/control and d/rules
* Include jsonschema and pandas to run additional CI tests

See Also

Package Description
python-codegen_1.0-2_all.deb extension to ast that allows AST -> Python code generation
python-codicefiscale_0.9+ds0-1_all.deb Generate and validate Italian "codice fiscale" (Python 2.x)
python-cogent-doc_1.9-14_all.deb docs for python-cogent
python-cogent_1.9-14_amd64.deb framework for genomic biology
python-collada_0.4-3_all.deb Python module for creating, editing and loading COLLADA
python-coloredlogs_7.3-1_all.deb colored terminal output for Python 2's logging module
python-colorlog_4.0.1-1_all.deb formatter to use with the logging module of Python 2
python-colormap_1.0.2-1_all.deb ease manipulation of matplotlib colormaps and color codecs (Python 2)
python-colorspacious_1.1.2-1_all.deb library for doing colorspace conversions - Python 2.X
python-colour_0.1.5-1_all.deb converts and manipulates various color representation - Python 2.X
python-comedilib_0.11.0-1_amd64.deb Python wrapper for Comedilib
python-commando_1.0.0-0.2_all.deb wrapper for argparse to define declaratively (Python 2)
python-commonmark-bkrs-doc_0.5.4+ds-2_all.deb Python parser for the CommonMark Markdown spec -- doc
python-commonmark-bkrs_0.5.4+ds-2_all.deb Python parser for the CommonMark Markdown spec -- Python
python-concurrent.futures_3.2.0-2_all.deb backport of concurrent.futures package from Python 3.2
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