psortb_3.0.6+dfsg-1_amd64.deb


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Description

psortb - bacterial localization prediction tool

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename psortb_3.0.6+dfsg-1_amd64.deb
Package name psortb
Package version 3.0.6+dfsg
Package release 1
Package architecture amd64
Package type deb
Category universe/science
Homepage http://www.psort.org/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 15.49 MB
Installed size 113.03 MB
PSORTb enables prediction of bacterial protein subcellular localization
(SCL) and provides a quick and inexpensive means for gaining insight
into protein function, verifying experimental results, annotating newly
sequenced bacterial genomes, detecting potential cell surface/secreted
drug targets, as well as identifying biomarkers for microbes.

Alternatives

Package Version Architecture Repository
psortb - - -

Requires

Name Value
libalgorithm-svm-perl -
libbio-perl-perl -
libc6 >= 2.14
libgcc1 >= 1:3.0
libmodhmm0 -
libsquid1 -
libstdc++6 >= 5
libsvm3 -
libsvmloc0 -
perl >= 5.28.0-3
perlapi-5.28.0 -
pftools -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package psortb_3.0.6+dfsg-1_amd64.deb
Source Package psortb

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install psortb deb package:
    # sudo apt-get install psortb

Files

Path
/usr/bin/psort
/usr/lib/psort/conf/analysis/modhmm/S_TMHMM_0.92b.hmg
/usr/lib/psort/conf/analysis/modhmm/amino_multi.pri
/usr/lib/psort/conf/analysis/modhmm/replacement_letter_multi.rpl
/usr/lib/psort/conf/analysis/motif/archaea/changes
/usr/lib/psort/conf/analysis/motif/archaea/motifs.txt
/usr/lib/psort/conf/analysis/motif/archaea/notes.txt
/usr/lib/psort/conf/analysis/motif/gramneg/motifs.txt
/usr/lib/psort/conf/analysis/motif/grampos/motifs.txt
/usr/lib/psort/conf/analysis/omp-motif/omp-motifs.txt
/usr/lib/psort/conf/analysis/profile/archaea/notes.txt
/usr/lib/psort/conf/analysis/profile/archaea/profile_ids
/usr/lib/psort/conf/analysis/profile/archaea/ps_ALL
/usr/lib/psort/conf/analysis/profile/gramneg/profile_ids
/usr/lib/psort/conf/analysis/profile/gramneg/ps_ALL
/usr/lib/psort/conf/analysis/profile/grampos/profile_ids
/usr/lib/psort/conf/analysis/profile/grampos/ps_ALL
/usr/lib/psort/conf/analysis/sclblast/makedb.sh
/usr/lib/psort/conf/analysis/sclblast/archaea/notes
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast
/usr/lib/psort/conf/analysis/sclblast/archaea/sclblast+swissprot+some_manual
/usr/lib/psort/conf/analysis/sclblast/gramneg/sclblast
/usr/lib/psort/conf/analysis/sclblast/grampos/sclblast
/usr/lib/psort/conf/analysis/signal/archaea/check-sig
/usr/lib/psort/conf/analysis/signal/archaea/model.hmm
/usr/lib/psort/conf/analysis/signal/archaea/model.svm
/usr/lib/psort/conf/analysis/signal/archaea/notes
/usr/lib/psort/conf/analysis/signal/gramneg/check-sig
/usr/lib/psort/conf/analysis/signal/gramneg/model.hmm
/usr/lib/psort/conf/analysis/signal/gramneg/model.svm
/usr/lib/psort/conf/analysis/signal/grampos/check-sig
/usr/lib/psort/conf/analysis/signal/grampos/model.hmm
/usr/lib/psort/conf/analysis/signal/grampos/model.svm
/usr/lib/psort/conf/analysis/subloc/archaea/notes.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cellwall/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Cytoplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Extracellular/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/archaea/Membrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Cytoplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Extracellular/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Innermembrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Outermembrane/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/gramneg/Periplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cellwall/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Extracellular/fre_patterns.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/SVM_MODEL.txt
/usr/lib/psort/conf/analysis/subloc/grampos/Membrane/fre_patterns.txt
/usr/lib/psort/conf/output/bayesian/archaea/bayes.model
/usr/lib/psort/conf/output/bayesian/gramneg/bayes-rpc.model
/usr/lib/psort/conf/output/bayesian/gramneg/bayes.model
/usr/lib/psort/conf/output/bayesian/grampos/bayes-rpc.model
/usr/lib/psort/conf/output/bayesian/grampos/bayes.model
/usr/lib/x86_64-linux-gnu/perl5/5.28/Algorithm/HMM.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Algorithm/HMM/Hit.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Algorithm/HMM/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Algorithm/HMM/Hit/Domain.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Algorithm/HMM/Hit/Global.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Motif.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/SVMLoc.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Signal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Motif/Match.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Motif/Pattern.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Constants.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Install.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/ModHMM.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/ModuleI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Pathway.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Profile.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/SVMLoc.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/AnalysisI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/Bayesian.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/HMMTOP.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/InputI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/ModHMM.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/Motif.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/Null.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/OMPMotif.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/OutputI.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/Profile.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/Rules.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/SCLBlast.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/SVMLoc.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/SVMLocApache.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Module/Signal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Profile/Match.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report/Formatter.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report/Result.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report/Formatter/html.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report/Formatter/long.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report/Formatter/normal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/Report/Formatter/terse.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/SVMLoc/DataSet.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/PSort/XMLRPC/Client.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/HMMTOP.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/SCLBlast.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/SCLBlastLocal.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/HMMTOP/Helix.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/HMMTOP/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/SCLBlast/Hit.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Run/SCLBlast/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/Bio/Tools/Signal/Report.pm
/usr/lib/x86_64-linux-gnu/perl5/5.28/auto/Algorithm/HMM/HMM.so
/usr/lib/x86_64-linux-gnu/perl5/5.28/auto/Algorithm/HMM/autosplit.ix
/usr/lib/x86_64-linux-gnu/perl5/5.28/auto/Bio/Tools/PSort/ModHMM/ModHMM.so
/usr/lib/x86_64-linux-gnu/perl5/5.28/auto/Bio/Tools/PSort/ModHMM/autosplit.ix
/usr/lib/x86_64-linux-gnu/perl5/5.28/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so
/usr/lib/x86_64-linux-gnu/perl5/5.28/auto/Bio/Tools/PSort/SVMLoc/autosplit.ix
/usr/share/doc/psortb/changelog.Debian.gz
/usr/share/doc/psortb/copyright
/usr/share/man/man1/psort.1.gz
/usr/share/man/man3/Algorithm::HMM.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Hit.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Hit::Domain.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Hit::Global.3pm.gz
/usr/share/man/man3/Algorithm::HMM::Report.3pm.gz
/usr/share/man/man3/Bio::Tools::Motif.3pm.gz
/usr/share/man/man3/Bio::Tools::Motif::Match.3pm.gz
/usr/share/man/man3/Bio::Tools::Motif::Pattern.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::ModHMM.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::AnalysisI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::InputI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::Motif.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::Null.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::OMPMotif.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::OutputI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Module::Profile.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::ModuleI.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Pathway.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Profile.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::Profile::Match.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::SVMLoc.3pm.gz
/usr/share/man/man3/Bio::Tools::PSort::SVMLoc::DataSet.3pm.gz
/usr/share/man/man3/Bio::Tools::Run::HMMTOP.3pm.gz
/usr/share/man/man3/Bio::Tools::SVMLoc.3pm.gz
/usr/share/man/man3/Bio::Tools::Signal.3pm.gz

Changelog

2018-09-26 - Andreas Tille <tille@debian.org>
psortb (3.0.6+dfsg-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.2.1
2018-04-10 - Andreas Tille <tille@debian.org>
psortb (3.0.5+dfsg-2) unstable; urgency=medium
[ Steve Langasek ]
* Enable build with -Wl, --as-needed
Closes: #895344
[ Andreas Tille ]
* Standards-Version: 4.1.4
* Point Vcs fields to salsa.debian.org
2018-02-20 - Andreas Tille <tille@debian.org>
psortb (3.0.5+dfsg-1) unstable; urgency=medium
* New upstream version
[ Carnë Draug ]
* d/control: enable autopkgtest with pkg-perl default tests; add missing
runtime dependencies on bioperl and Algorithm::SVM.
[ Steffen Moeller ]
* d/upstream/metadata:
- Added references to registries
- yamllint cleanliness
* d/copyright: removed tailing ":" from upstream name
[ Andreas Tille ]
* cme fix dpkg-control
* debhelper 11
* d/rules: do not parse d/changelog
2017-05-05 - Andreas Tille <tille@debian.org>
psortb (3.0.4+dfsg-2) unstable; urgency=medium
* Fix root dir in config file
* Add pftools to Build-Depends since it is checked in build process
2017-04-30 - Andreas Tille <tille@debian.org>
psortb (3.0.4+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #861081)

See Also

Package Description
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pspp_1.2.0-2ubuntu1_amd64.deb Statistical analysis tool
pspresent_1.3-4build1_amd64.deb fullscreen PostScript presentation tool
psrip_1.3-8_all.deb Extract images from PostScript files
pssh_2.3.1-1_all.deb Parallel versions of SSH-based tools
psst_0.1-7_amd64.deb power stress and shaping tool
pst-utils_0.6.71-0.1_amd64.deb tools for reading Microsoft Outlook PST files
pstack_1.3.1-1build1_amd64.deb Display stack trace of a running process
pstoedit_3.73-1build3_amd64.deb PostScript and PDF files to editable vector graphics converter
pstotext_1.9-6build1_amd64.deb Extract text from PostScript and PDF files
psurface_2.0.0-2_amd64.deb piecewise linear bijections between triangulated surfaces -- utilities
psutils_1.17.dfsg-4_amd64.deb PostScript document handling utilities
psychopy_1.85.3.dfsg-1build1_all.deb environment for creating psychology stimuli in Python
psychtoolbox-3-common_3.0.15.20190207.dfsg1-1_all.deb toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib_3.0.15.20190207.dfsg1-1_amd64.deb toolbox for vision research -- arch-specific parts
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