pscan-tfbs_1.2.2-2_amd64.deb


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Description

pscan-tfbs - search for transcription factor binding sites

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename pscan-tfbs_1.2.2-2_amd64.deb
Package name pscan-tfbs
Package version 1.2.2
Package release 2
Package architecture amd64
Package type deb
Category universe/science
Homepage http://www.beaconlab.it/pscan
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 67.37 KB
Installed size 189.00 KB
Pscan finds Over-represented Transcription Factor Binding Site Motifs in
Sequences from Co-Regulated or Co-Expressed Genes.
Pscan is a software tool that scans a set of sequences (e.g. promoters)
from co-regulated or co-expressed genes with motifs describing the
binding specificity of known transcription factors and assesses which
motifs are significantly over- or under-represented, providing thus
hints on which transcription factors could be common regulators of the
genes studied, together with the location of their candidate binding
sites in the sequences. Pscan does not resort to comparisons with
orthologous sequences and experimental results show that it compares
favorably to other tools for the same task in terms of false positive
predictions and computation time. The website is free and open to all
users and there is no login requirement.

Alternatives

Package Version Architecture Repository
pscan-tfbs_1.2.2-2_i386.deb 1.2.2 i386 Ubuntu Universe
pscan-tfbs - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.3.1
libgsl23 >= 2.5
libstdc++6 >= 5.2

Download

Type URL
Mirror archive.ubuntu.com
Binary Package pscan-tfbs_1.2.2-2_amd64.deb
Source Package pscan-tfbs

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pscan-tfbs deb package:
    # sudo apt-get install pscan-tfbs

Files

Path
/usr/bin/pscan-tfbs
/usr/lib/debian-med/bin/pscan
/usr/lib/debian-med/share/man/man1/pscan.1.gz
/usr/share/doc/pscan-tfbs/HELP.txt.gz
/usr/share/doc/pscan-tfbs/README.Debian
/usr/share/doc/pscan-tfbs/REFERENCE.txt
/usr/share/doc/pscan-tfbs/changelog.Debian.gz
/usr/share/doc/pscan-tfbs/copyright
/usr/share/doc/pscan-tfbs/examples/example_matrix_file.wil
/usr/share/man/man1/pscan-tfbs.1.gz

Changelog

2018-06-08 - Andreas Tille <tille@debian.org>
pscan-tfbs (1.2.2-2) unstable; urgency=medium
* Team upload.
* Remove unused template files
* provide /usr/bin/pscan-tfbs to avoid file name conflict with pscan
package and keep the original upstream name in
/usr/lib/debian-med/bin/pscan
Closes: #901039
* Standards-Version: 4.1.4
2018-05-03 - Steffen Moeller <moeller@debian.org>
pscan-tfbs (1.2.2-1) unstable; urgency=low
[ Steffen Moeller ]
* Initial release (Closes: #673182)
* Added man page
* Homepage claims that version 1.4 exists but I can not find it
(Andreas Tille,  Mon, 18 Dec 2017 21:19:24 +0100)
Presumably this refers to the web site more than to the
C code that seems untouched since ever.
(Steffen Moeller, Thu, 03 May 2018 12:05:41 +0200)
* Applying link-time optimisation
[ Andreas Tille ]
* Moved packaging from SVN to Git

See Also

Package Description
pscan_1.2-9build1_amd64.deb Format string security checker for C files
psensor-common_1.1.5-1ubuntu4_all.deb common files for Psensor and Psensor server
psensor-server_1.1.5-1ubuntu4_amd64.deb Psensor server for monitoring hardware sensors remotely
psensor_1.1.5-1ubuntu4_amd64.deb display graphs for monitoring hardware temperature
pseudo_1.9.0+git20180920-1_amd64.deb advanced tool for simulating superuser privileges
psfex_3.17.1+dfsg-5build1_amd64.deb Point Spread Function model extractor
psgml_1.4.0-7_all.deb Emacs major mode for editing SGML documents
psi-plus-common_1.4.554-1_all.deb common files for Psi+
psi-plus-l10n_1.4.554-1_all.deb localization files for Psi+
psi-plus-plugins_1.4.554-1_amd64.deb plugins for Psi+
psi-plus-skins_1.4.554-1_all.deb skins for Psi+
psi-plus-sounds_1.4.554-1_all.deb sound files for Psi+
psi-plus-webkit_1.4.554-1_amd64.deb Qt-based XMPP client (WebKit version)
psi-plus_1.4.554-1_amd64.deb Qt-based XMPP client (basic version)
psi-translations_1.12_all.deb Translations for psi
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