prokka_1.13.4+dfsg-1.1_all.deb


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Description

prokka - rapid annotation of prokaryotic genomes

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename prokka_1.13.4+dfsg-1.1_all.deb
Package name prokka
Package version 1.13.4+dfsg
Package release 1.1
Package architecture all
Package type deb
Category universe/science
Homepage http://www.vicbioinformatics.com/software.prokka.shtml
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 7.51 MB
Installed size 70.46 MB
A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a
quad-core computer, and scales well to 32 core SMP systems. It produces GFF3,
GBK and SQN files that are ready for editing in Sequin and ultimately submitted
to Genbank/DDJB/ENA.

Alternatives

Package Version Architecture Repository
prokka_1.13.4+dfsg-1.1_all.deb 1.13.4+dfsg all Ubuntu Universe
prokka - - -

Requires

Name Value
aragorn -
hmmer -
infernal -
libbio-perl-perl -
libswiss-perl -
libxml-simple-perl -
ncbi-blast+ -
ncbi-tools-bin -
parallel -
perl:any -
prodigal -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package prokka_1.13.4+dfsg-1.1_all.deb
Source Package prokka

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install prokka deb package:
    # sudo apt-get install prokka

Files

Path
/usr/bin/prokka
/usr/bin/prokka-biocyc_to_fasta_db
/usr/bin/prokka-cdd_to_hmm
/usr/bin/prokka-clusters_to_hmm
/usr/bin/prokka-genbank_to_fasta_db
/usr/bin/prokka-genpept_to_fasta_db
/usr/bin/prokka-hamap_to_hmm
/usr/bin/prokka-uniprot_to_fasta_db
/usr/share/doc/prokka/README.Debian
/usr/share/doc/prokka/README.md.gz
/usr/share/doc/prokka/changelog.Debian.gz
/usr/share/doc/prokka/copyright
/usr/share/doc/prokka/get-additional-data
/usr/share/lintian/overrides/prokka
/usr/share/man/man1/prokka-biocyc_to_fasta_db.1.gz
/usr/share/man/man1/prokka-cdd_to_hmm.1.gz
/usr/share/man/man1/prokka-clusters_to_hmm.1.gz
/usr/share/man/man1/prokka-genbank_to_fasta_db.1.gz
/usr/share/man/man1/prokka-genpept_to_fasta_db.1.gz
/usr/share/man/man1/prokka-hamap_to_hmm.1.gz
/usr/share/man/man1/prokka-uniprot_to_fasta_db.1.gz
/usr/share/man/man1/prokka.1.gz
/usr/share/prokka/db/cm/Bacteria
/usr/share/prokka/db/cm/README
/usr/share/prokka/db/cm/Viruses
/usr/share/prokka/db/genus/Enterococcus
/usr/share/prokka/db/genus/Escherichia
/usr/share/prokka/db/genus/Staphylococcus
/var/lib/prokka/db/cm/Bacteria
/var/lib/prokka/db/cm/README
/var/lib/prokka/db/cm/Viruses
/var/lib/prokka/db/genus/Enterococcus
/var/lib/prokka/db/genus/Escherichia
/var/lib/prokka/db/genus/Staphylococcus

Changelog

2019-02-06 - Adrian Bunk <bunk@debian.org>
prokka (1.13.4+dfsg-1.1) unstable; urgency=medium
* Non-maintainer upload.
* Add the missing dependency on libxml-simple-perl.
2019-02-04 - Andreas Tille <tille@debian.org>
prokka (1.13.4+dfsg-1) unstable; urgency=low
* Initial release (Closes: #778246)

See Also

Package Description
prolix_0.03-1_all.deb tool to interactively filter chatty command output
prometheus-alertmanager_0.15.3+ds-3_amd64.deb Handle and deliver alerts created by Prometheus
prometheus-apache-exporter_0.5.0+ds-2_amd64.deb Prometheus exporter for Apache server metrics
prometheus-bind-exporter_0.2~git20161221+dfsg-3_amd64.deb Prometheus exporter for Bind server metrics
prometheus-bird-exporter_1.2.2-1_amd64.deb Prometheus exporter for the BIRD routing daemon
prometheus-blackbox-exporter_0.13.0+ds-2_amd64.deb Blackbox prober for Prometheus
prometheus-haproxy-exporter_0.9.0+git20180917+ds-1_amd64.deb HAProxy Exporter for Prometheus
prometheus-mailexporter_1.0-2_amd64.deb exports prometheus-style metrics about mail server functionality
prometheus-mongodb-exporter_1.0.0+git20180522.e755a44-1_amd64.deb Prometheus exporter for MongoDB
prometheus-mysqld-exporter_0.11.0+ds-1_amd64.deb Prometheus exporter for MySQL server
prometheus-nginx-exporter_0.1.0-1_amd64.deb Prometheus exporter for NGINX webservers
prometheus-nginx-vts-exporter_0.10.3+git20180501.43b4556+ds-2_amd64.deb Prometheus exporter for Nginx VTS metrics
prometheus-node-exporter_0.17.0+ds-3_amd64.deb Prometheus exporter for machine metrics
prometheus-pgbouncer-exporter_1.7-1_all.deb Export metrics from pgbouncer to Prometheus
prometheus-postfix-exporter_0.1.2-2_amd64.deb Prometheus exporter for Postfix mail servers
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