profphd_1.0.42-3_all.deb


Advertisement

Description

profphd - secondary structure and solvent accessibility predictor

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename profphd_1.0.42-3_all.deb
Package name profphd
Package version 1.0.42
Package release 3
Package architecture all
Package type deb
Category universe/science
Homepage http://predictprotein.org/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 4.30 MB
Installed size 25.58 MB
This package provides prof(1), the protein secondary structure, accessibility
and transmembrane helix predictor from Burkhard Rost.  Prediction is either
done from protein sequence alone or from an alignment - the latter should be
used for optimal performance.
How well does prof(1) perform?
* Secondary structure is predicted at an expected average accuracy > 72% for
the three states helix, strand and loop.
* Solvent accessibility is predicted at a correlation coefficient
(correlation between experimentally observed and predicted relative
solvent accessibility) of 0.54
* Transmembrane helix prediction has an expected per-residue accuracy of
about 95%.  The number of false positives, i.e., transmembrane helices
predicted in globular proteins, is about 2%.

Alternatives

Package Version Architecture Repository
profphd_1.0.42-3_all.deb 1.0.42 all Ubuntu Universe
profphd - - -

Requires

Name Value
librg-utils-perl -
perl:any -
profnet-prof -
profphd-net -
profphd-utils -

Conflicts

Name Value
profphd-data -
profphd-perl -

Replaces

Name Value
profphd-data -
profphd-perl -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package profphd_1.0.42-3_all.deb
Source Package profphd

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install profphd deb package:
    # sudo apt-get install profphd

Files

Path
/usr/bin/prof
/usr/share/doc/profphd/AUTHORS
/usr/share/doc/profphd/README.Debian
/usr/share/doc/profphd/README.gz
/usr/share/doc/profphd/changelog.Debian.gz
/usr/share/doc/profphd/copyright
/usr/share/man/man1/prof.1.gz
/usr/share/profphd/prof/prof
/usr/share/profphd/prof/prof.pl
/usr/share/profphd/prof/profconv
/usr/share/profphd/prof/embl/phd.pl
/usr/share/profphd/prof/embl/mat/Doc-phd-code.pl
/usr/share/profphd/prof/embl/mat/Maxhom_Blosum.metric
/usr/share/profphd/prof/embl/mat/Maxhom_GCG.metric
/usr/share/profphd/prof/embl/mat/Maxhom_McLachlan.metric
/usr/share/profphd/prof/embl/mat/Maxhom_Sec_Struc.metric
/usr/share/profphd/prof/embl/mat/Maxhom_Struc_IO.metric
/usr/share/profphd/prof/embl/mat/__THESE_METRIC_FILES_ARE_IDENTICAL_TO_THOSE_IN_PROF-MAT__
/usr/share/profphd/prof/embl/mat/abbrPhd3.txt
/usr/share/profphd/prof/embl/mat/abbrPhdAcc.txt
/usr/share/profphd/prof/embl/mat/abbrPhdBoth.txt
/usr/share/profphd/prof/embl/mat/abbrPhdHtm.txt
/usr/share/profphd/prof/embl/mat/abbrPhdRdb3.txt
/usr/share/profphd/prof/embl/mat/abbrPhdSec.txt
/usr/share/profphd/prof/embl/mat/headPhd3.txt
/usr/share/profphd/prof/embl/mat/headPhdAcc.txt
/usr/share/profphd/prof/embl/mat/headPhdBoth.txt
/usr/share/profphd/prof/embl/mat/headPhdConcise.txt
/usr/share/profphd/prof/embl/mat/headPhdHtm.txt
/usr/share/profphd/prof/embl/mat/headPhdSec.txt
/usr/share/profphd/prof/embl/mat/help-manual.txt
/usr/share/profphd/prof/embl/mat/help-options.txt
/usr/share/profphd/prof/embl/net/Exp152x-15rc.DAT
/usr/share/profphd/prof/embl/net/Exp152x-15rcc.DAT
/usr/share/profphd/prof/embl/net/Exp152x-15rccld.DAT
/usr/share/profphd/prof/embl/net/Exp152x-15rcic.DAT
/usr/share/profphd/prof/embl/net/Exp152x-15rcicld.DAT
/usr/share/profphd/prof/embl/net/Exp152x-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/Exp152x-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/Exp152x-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/Exp252x-15rccld-A1.DAT
/usr/share/profphd/prof/embl/net/Exp252x-15rccld.DAT
/usr/share/profphd/prof/embl/net/Exp252x-15rcic-A1.DAT
/usr/share/profphd/prof/embl/net/Exp252x-15rcic.DAT
/usr/share/profphd/prof/embl/net/Exp252x-15rcicld-A1.DAT
/usr/share/profphd/prof/embl/net/Exp252x-15rcicld.DAT
/usr/share/profphd/prof/embl/net/Exp252x-w9-15rccld-A1.DAT
/usr/share/profphd/prof/embl/net/Exp252x-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/Exp252x-w9-15rcicld-A1.DAT
/usr/share/profphd/prof/embl/net/Exp252x-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/Exp317x-15rccld.DAT
/usr/share/profphd/prof/embl/net/Exp317x-15rcic.DAT
/usr/share/profphd/prof/embl/net/Exp317x-15rcicld.DAT
/usr/share/profphd/prof/embl/net/Exp317x-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/Exp317x-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/F252x-15pci.DAT
/usr/share/profphd/prof/embl/net/F252x-15pcicld.DAT
/usr/share/profphd/prof/embl/net/F317x-pci.DAT
/usr/share/profphd/prof/embl/net/F317x-pcicld.DAT
/usr/share/profphd/prof/embl/net/S252x-pc-15pci.DAT
/usr/share/profphd/prof/embl/net/S252x-pc-15pcicld.DAT
/usr/share/profphd/prof/embl/net/S252x-pcc-15pcicld.DAT
/usr/share/profphd/prof/embl/net/S252x-pccld-15pci.DAT
/usr/share/profphd/prof/embl/net/S252x-pccld-15pcicld.DAT
/usr/share/profphd/prof/embl/net/S252x-rc-15pci.DAT
/usr/share/profphd/prof/embl/net/S252x-rc-15pcicld.DAT
/usr/share/profphd/prof/embl/net/S252x-rcc-15pcicld.DAT
/usr/share/profphd/prof/embl/net/S252x-rccld-15pci.DAT
/usr/share/profphd/prof/embl/net/S252x-rccld-15pcicld.DAT
/usr/share/profphd/prof/embl/net/S317x-pc-pci.DAT
/usr/share/profphd/prof/embl/net/S317x-pc-pcicld.DAT
/usr/share/profphd/prof/embl/net/S317x-pcc-pcicld.DAT
/usr/share/profphd/prof/embl/net/S317x-pccld-pci.DAT
/usr/share/profphd/prof/embl/net/S317x-pccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/S317x-rc-pci.DAT
/usr/share/profphd/prof/embl/net/S317x-rc-pcicld.DAT
/usr/share/profphd/prof/embl/net/S317x-rcc-pcicld.DAT
/usr/share/profphd/prof/embl/net/S317x-rccld-pci.DAT
/usr/share/profphd/prof/embl/net/S317x-rccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/Stm69x-pccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/Stm69x-pccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/Stm69x-rccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/Stm69x-rccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/Tm69x-pcicld.DAT
/usr/share/profphd/prof/embl/net/Tm69x-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152a-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152b-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-w9-15rcc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152c-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152d-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152e-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152f-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-w9-15rc.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-w9-15rccld.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-w9-15rcic.DAT
/usr/share/profphd/prof/embl/net/cross/Exp152g-w9-15rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/F152a-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152a-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152a-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/F152b-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152b-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152b-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/F152c-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152c-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152c-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/F152d-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152d-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152d-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/F152e-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152e-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152e-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/F152f-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152f-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152f-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/F152g-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/F152g-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/F152g-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152a-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152b-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152c-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152d-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152e-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152f-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15p-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15pc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15pc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15pc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15pcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15r-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15rc-15pc.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15rc-15pci.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15rc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/S152g-15rcc-15pcic.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69a-pccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69a-pccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69a-rccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69a-rccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69b-pccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69b-pccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69b-rccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69b-rccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69c-pccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69c-pccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69c-rccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69c-rccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69d-pccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69d-pccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69d-rccld-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Stm69d-rccld-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69a-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69a-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69b-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69b-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69c-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69c-rcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69d-pcicld.DAT
/usr/share/profphd/prof/embl/net/cross/Tm69d-rcicld.DAT
/usr/share/profphd/prof/embl/para/Para-exp152x-mar94.com
/usr/share/profphd/prof/embl/para/Para-exp252-apr94.com
/usr/share/profphd/prof/embl/para/Para-exp317-apr94.com
/usr/share/profphd/prof/embl/para/Para-exp450-oct94.com
/usr/share/profphd/prof/embl/para/Para-exptest.com
/usr/share/profphd/prof/embl/para/Para-exptmp.com
/usr/share/profphd/prof/embl/para/Para-htm69-aug94.com
/usr/share/profphd/prof/embl/para/Para-htmtest.com
/usr/share/profphd/prof/embl/para/Para-magma.com
/usr/share/profphd/prof/embl/para/Para-sec317-may94.com
/usr/share/profphd/prof/embl/para/Para-test.com
/usr/share/profphd/prof/embl/para/Para-tmp.com
/usr/share/profphd/prof/embl/para/cross/List152a-train
/usr/share/profphd/prof/embl/para/cross/List152b-train
/usr/share/profphd/prof/embl/para/cross/List152c-train
/usr/share/profphd/prof/embl/para/cross/List152d-train
/usr/share/profphd/prof/embl/para/cross/List152e-train
/usr/share/profphd/prof/embl/para/cross/List152f-train
/usr/share/profphd/prof/embl/para/cross/List152g-train
/usr/share/profphd/prof/embl/para/cross/List152x-train
/usr/share/profphd/prof/embl/para/cross/List252x-train
/usr/share/profphd/prof/embl/para/cross/List317x-train
/usr/share/profphd/prof/embl/para/cross/List69a-train
/usr/share/profphd/prof/embl/para/cross/List69b-train
/usr/share/profphd/prof/embl/para/cross/List69c-train
/usr/share/profphd/prof/embl/para/cross/List69d-train
/usr/share/profphd/prof/embl/para/cross/List69x-train
/usr/share/profphd/prof/embl/para/cross/Para-cic-152a.com
/usr/share/profphd/prof/embl/para/cross/Para-cic-152b.com
/usr/share/profphd/prof/embl/para/cross/Para-cic-152c.com
/usr/share/profphd/prof/embl/para/cross/Para-cic-152d.com
/usr/share/profphd/prof/embl/para/cross/Para-cic-152e.com
/usr/share/profphd/prof/embl/para/cross/Para-cic-152f.com
/usr/share/profphd/prof/embl/para/cross/Para-cic-152g.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152a.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152b.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152c.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152d.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152e.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152f.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152g.com
/usr/share/profphd/prof/embl/para/cross/Para-exp-152n.com
/usr/share/profphd/prof/embl/para/cross/Para-exp317-may94.com
/usr/share/profphd/prof/embl/para/cross/Para-htm69-aug94.com
/usr/share/profphd/prof/embl/para/cross/Para-htm69a.com
/usr/share/profphd/prof/embl/para/cross/Para-htm69b.com
/usr/share/profphd/prof/embl/para/cross/Para-htm69c.com
/usr/share/profphd/prof/embl/para/cross/Para-htm69d.com
/usr/share/profphd/prof/embl/para/cross/Para-sec317-may94.com
/usr/share/profphd/prof/embl/para/cross/list_trainlists_all
/usr/share/profphd/prof/embl/para/cross/list_trainlists_htm
/usr/share/profphd/prof/embl/para/cross/list_trainlists_secacc
/usr/share/profphd/prof/embl/scr/conv_phd2ascii.pl
/usr/share/profphd/prof/embl/scr/conv_phd2casp2.pl
/usr/share/profphd/prof/embl/scr/conv_phd2casp4.pl
/usr/share/profphd/prof/embl/scr/conv_phd2dssp.pl
/usr/share/profphd/prof/embl/scr/conv_phd2hssp.pl
/usr/share/profphd/prof/embl/scr/conv_phd2html.pl
/usr/share/profphd/prof/embl/scr/conv_phd2html2000.pl
/usr/share/profphd/prof/embl/scr/conv_phd2msf.pl
/usr/share/profphd/prof/embl/scr/conv_rdb2pred.pl
/usr/share/profphd/prof/embl/scr/ctime.pl
/usr/share/profphd/prof/embl/scr/lib-col.pl
/usr/share/profphd/prof/embl/scr/lib-phd.pl
/usr/share/profphd/prof/embl/scr/lib-phdhtml.pm
/usr/share/profphd/prof/embl/scr/pdbid_sort.pl
/usr/share/profphd/prof/embl/scr/phd-mergeRdbSecAcc.pl
/usr/share/profphd/prof/embl/scr/phd_htmfil.pl
/usr/share/profphd/prof/embl/scr/phd_htmref.pl
/usr/share/profphd/prof/embl/scr/phd_htmtop.pl
/usr/share/profphd/prof/embl/scr/pvmgetarch.sh
/usr/share/profphd/prof/embl/scr/rdb_tokg.pl
/usr/share/profphd/prof/embl/scr/test-install.pl
/usr/share/profphd/prof/embl/scr/tlphd-add-nali2rdb.pl
/usr/share/profphd/prof/embl/scr/lib/all5.pl
/usr/share/profphd/prof/embl/scr/lib/br.pl
/usr/share/profphd/prof/embl/scr/lib/cgi-lib.pl
/usr/share/profphd/prof/embl/scr/lib/comp.pl
/usr/share/profphd/prof/embl/scr/lib/ctime.pl
/usr/share/profphd/prof/embl/scr/lib/file.pl
/usr/share/profphd/prof/embl/scr/lib/formats.pl
/usr/share/profphd/prof/embl/scr/lib/hssp.pl
/usr/share/profphd/prof/embl/scr/lib/hssp_new.pl
/usr/share/profphd/prof/embl/scr/lib/molbio.pl
/usr/share/profphd/prof/embl/scr/lib/prot.pl
/usr/share/profphd/prof/embl/scr/lib/scr.pl
/usr/share/profphd/prof/embl/scr/lib/sys.pl
/usr/share/profphd/prof/embl/scr/pack/copf.pm
/usr/share/profphd/prof/embl/scr/pack/hssp_filter.pm
/usr/share/profphd/prof/embl/scr/pack/phd_htmfil.pm
/usr/share/profphd/prof/embl/scr/pack/phd_htmref.pm
/usr/share/profphd/prof/embl/scr/pack/phd_htmtop.pm
/usr/share/profphd/prof/exa/1ppt.f
/usr/share/profphd/prof/exa/1ppt.f.rdbProf
/usr/share/profphd/prof/exa/1ppt.hssp
/usr/share/profphd/prof/exa/1ppt.hssp.prof
/usr/share/profphd/prof/exa/1ppt.phdNotHtm
/usr/share/profphd/prof/exa/1ppt.phdPred
/usr/share/profphd/prof/exa/1ppt.phdRdb
/usr/share/profphd/prof/exa/256b.dssp
/usr/share/profphd/prof/exa/2ppt.fastamul
/usr/share/profphd/prof/exa/2ppt.profSec
/usr/share/profphd/prof/exa/2ppt.rdbProf
/usr/share/profphd/prof/exa/2ppt.rdbProfSec
/usr/share/profphd/prof/exa/3ppt.gcg
/usr/share/profphd/prof/exa/8rnt.msf
/usr/share/profphd/prof/exa/8rnt.profSec
/usr/share/profphd/prof/exa/8rnt.rdbProfSec
/usr/share/profphd/prof/exa/8rntSec.prof
/usr/share/profphd/prof/exa/8rnt_prof.html
/usr/share/profphd/prof/exa/9rnt.profSec
/usr/share/profphd/prof/exa/9rnt.rdbProfSec
/usr/share/profphd/prof/exa/9rnt.saf
/usr/share/profphd/prof/exa/PSA2_HUMAN.safFil
/usr/share/profphd/prof/exa/ReadMe
/usr/share/profphd/prof/exa/paho_chick
/usr/share/profphd/prof/exa/paho_chick.f
/usr/share/profphd/prof/exa/paho_chick.profSec
/usr/share/profphd/prof/exa/paho_chick.rdbProfSec
/usr/share/profphd/prof/exa/tsnap_query.fasta
/usr/share/profphd/prof/exa/tsnap_query.rdbProf.goldstandard_yachdav_SNAP_prof
/usr/share/profphd/prof/mat/Blast_blosum62.metric
/usr/share/profphd/prof/mat/DOTncbirc
/usr/share/profphd/prof/mat/Maxhom_Blosum.metric
/usr/share/profphd/prof/mat/Maxhom_GCG.metric
/usr/share/profphd/prof/mat/Maxhom_McLachlan.metric
/usr/share/profphd/prof/mat/Maxhom_Sec_Struc.metric
/usr/share/profphd/prof/mat/Maxhom_Struc_IO.metric
/usr/share/profphd/prof/net/ACChssp1_13ball.jct
/usr/share/profphd/prof/net/ACChssp1_13bsumh.jct
/usr/share/profphd/prof/net/ACChssp1_13uall.jct
/usr/share/profphd/prof/net/ACChssp1_13usumh.jct
/usr/share/profphd/prof/net/ACChssp3_13ball.jct
/usr/share/profphd/prof/net/ACChssp3_13bsumh.jct
/usr/share/profphd/prof/net/ACChssp3_13uall.jct
/usr/share/profphd/prof/net/ACChssp3_13usumh.jct
/usr/share/profphd/prof/net/HTMhssp1_21ball.jct
/usr/share/profphd/prof/net/HTMhssp1_21uall.jct
/usr/share/profphd/prof/net/PROFacc.par
/usr/share/profphd/prof/net/PROFacc_best.par
/usr/share/profphd/prof/net/PROFacc_fast.par
/usr/share/profphd/prof/net/PROFacc_good.par
/usr/share/profphd/prof/net/PROFacc_tst.jct
/usr/share/profphd/prof/net/PROFboth.par
/usr/share/profphd/prof/net/PROFboth_best.par
/usr/share/profphd/prof/net/PROFboth_fast.par
/usr/share/profphd/prof/net/PROFboth_good.par
/usr/share/profphd/prof/net/PROFboth_tst.par
/usr/share/profphd/prof/net/PROFsec.par
/usr/share/profphd/prof/net/PROFsec_best.par
/usr/share/profphd/prof/net/PROFsec_fast.par
/usr/share/profphd/prof/net/PROFsec_good.par
/usr/share/profphd/prof/net/PROFsec_tst.jct
/usr/share/profphd/prof/net/SEChssp1_17ball.jct
/usr/share/profphd/prof/net/SEChssp1_17uall.jct
/usr/share/profphd/prof/net/SEChssp1_21ball.jct
/usr/share/profphd/prof/net/SEChssp1_21uall.jct
/usr/share/profphd/prof/net/SEChssp2_17bball.jct
/usr/share/profphd/prof/net/SEChssp2_17bball.par
/usr/share/profphd/prof/net/SEChssp2_17buall.jct
/usr/share/profphd/prof/net/SEChssp2_17buall.par
/usr/share/profphd/prof/net/SEChssp2_17uball.jct
/usr/share/profphd/prof/net/SEChssp2_17uball.par
/usr/share/profphd/prof/net/SEChssp2_17uuall.jct
/usr/share/profphd/prof/net/SEChssp2_17uuall.par
/usr/share/profphd/prof/net/SEChssp2_21bball.jct
/usr/share/profphd/prof/net/SEChssp2_21bball.par
/usr/share/profphd/prof/net/SEChssp2_21buall.jct
/usr/share/profphd/prof/net/SEChssp2_21buall.par
/usr/share/profphd/prof/net/SEChssp2_21uball.jct
/usr/share/profphd/prof/net/SEChssp2_21uball.par
/usr/share/profphd/prof/net/SEChssp2_21uuall.jct
/usr/share/profphd/prof/net/SEChssp2_21uuall.par
/usr/share/profphd/prof/net/SEChssp3_17b.jct
/usr/share/profphd/prof/net/SEChssp3_17u.jct
/usr/share/profphd/prof/net/SEChssp3_21b.jct
/usr/share/profphd/prof/net/SEChssp3_21b.par
/usr/share/profphd/prof/net/SEChssp3_21u.jct
/usr/share/profphd/prof/net/SEChssp3_21u.par
/usr/share/profphd/prof/scr/CONFprof.pl
/usr/share/profphd/prof/scr/conv_prof.pl
/usr/share/profphd/prof/scr/conv_prof2hssp.pl
/usr/share/profphd/prof/scr/prof.pl
/usr/share/profphd/prof/scr/pvmgetarch.sh
/usr/share/profphd/prof/scr/test-install.pl
/usr/share/profphd/prof/scr/tlprof_blastmat2hssp.pl
/usr/share/profphd/prof/scr/tlprof_htmfil.pl
/usr/share/profphd/prof/scr/tlprof_htmref.pl
/usr/share/profphd/prof/scr/tlprof_htmtop.pl
/usr/share/profphd/prof/scr/tlprof_jury.pl
/usr/share/profphd/prof/scr/tlprof_ri-sigma.pl
/usr/share/profphd/prof/scr/lib/dead_code.pl
/usr/share/profphd/prof/scr/lib/dead_code_tmp.pl
/usr/share/profphd/prof/scr/lib/lib-col.pl
/usr/share/profphd/prof/scr/lib/lib-prof.pl
/usr/share/profphd/prof/scr/lib/lib-proferr.pl
/usr/share/profphd/prof/scr/lib/lib-profhtml.pl
/usr/share/profphd/prof/scr/lib/lib-profwrt.pl
/usr/share/profphd/prof/scr/lib/prof.pm
/usr/share/profphd/prof/scr/pack/tlprof_htmfil.pm
/usr/share/profphd/prof/scr/pack/tlprof_htmref.pm
/usr/share/profphd/prof/scr/pack/tlprof_htmtop.pm

Changelog

2018-07-13 - Andreas Tille <tille@debian.org>
profphd (1.0.42-3) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
2017-11-16 - Tatiana Malygina <merlettaia@gmail.com>
profphd (1.0.42-2) unstable; urgency=medium
[ Tatiana Malygina ]
* Team upload.
* cme fix dpkg-control
* cme fix dpkg-copyright
* add hardening in d/rules
* add patches 1-4 to use latest perl 5.22 (UNFINISHED! checking if this works) 
* add debian/tests (unfinished too)
* remove autopkgtest-perl commands - they actually do nothing - and replaced 
them with syntax check for all .pm files inside src dir (which is run with 
command 'perl -c <name>.pm')
* update comments in debian/tests/profphd-install-test
* add header to debian/patches/5_fix_regex_warning.patch
* cleaned up debian/patches/3_fix_indexing.patch
[ Andreas Tille ]
* Moved packaging from SVN to Git
* debhelper 10
* d/rules: do not parse d/changelog
* Standards-Version: 4.1.1
2015-07-31 - Andreas Tille <tille@debian.org>
profphd (1.0.42-1) unstable; urgency=medium
* Moved debian/upstream to debian/upstream/metapackages
* remove redundant stuff from d/watch
* debhelper 9
* Priority: optional
* short dh instead of cdbs
* cme fix dpkg-control
* DEP5 fix
2013-08-29 - Andreas Tille <tille@debian.org>
profphd (1.0.40-1) unstable; urgency=low
[ Laszlo Kajan ]
* New upstream release.
[ Gregor Herrmann ]
* Fix "FTBFS with perl 5.18: POD failure":
add patch to fix POD
(Closes: #720497)
[ Andreas Tille ]
* cme fix dpkg-control
* anonscm in Vcs fields
2012-08-14 - Laszlo Kajan <lkajan@rostlab.org>
profphd (1.0.39-1) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream: Make author field BibTeX compliant
[ Laszlo Kajan ]
* New upstream release. (Closes: #684857)
2011-10-26 - Andreas Tille <tille@debian.org>
profphd (1.0.38-1) unstable; urgency=low
[ Laszlo Kajan ]
* New upstream release
[ Andreas Tille ]
* debian/control: Added rsync to Build-Depends
Closes: #646662
* debian/watch: Stripped unneeded comments
* debian/patches: Deleted empty dir
2011-09-28 - Laszlo Kajan <lkajan@rostlab.org>
profphd (1.0.37-1) unstable; urgency=low
* Initial release in Debian (Closes: #643324)
* New upstream release
2011-09-28 - Laszlo Kajan <lkajan@rostlab.org>
profphd (1.0.36-1) UNRELEASED; urgency=low
* New upstream release
2011-09-27 - Laszlo Kajan <lkajan@rostlab.org>
profphd (1.0.35-1) UNRELEASED; urgency=low
* added Replaces and Conflicts to control file for
profphd-perl and profphd-data
2011-05-20 - Laszlo Kajan <lkajan@rostlab.org>
profphd (1.0.34) unstable; urgency=low
* fixed "HTMTOP_RID    :-10.942" bug in src/prof/scr/lib/lib-prof.pl

See Also

Package Description
proftmb_1.1.12-8_amd64.deb per-residue prediction of bacterial transmembrane beta barrels
proftpd-basic_1.3.6-4_amd64.deb Versatile, virtual-hosting FTP daemon - binaries
proftpd-dev_1.3.6-4_amd64.deb Versatile, virtual-hosting FTP daemon - development files
proftpd-doc_1.3.6-4_all.deb Versatile, virtual-hosting FTP daemon - documentation
proftpd-mod-autohost_0.4-2build1_amd64.deb ProFTPD module mod_autohost
proftpd-mod-case_0.7+git73896501cf-1build1_amd64.deb ProFTPD module mod_case
proftpd-mod-clamav_0.14~rc2-1build3_amd64.deb ProFTPD module mod_clamav
proftpd-mod-counter_0.6.1-2_amd64.deb ProFTPD module mod_counter
proftpd-mod-dnsbl_0.1.5-4build4_amd64.deb ProFTPD module mod_dnsbl
proftpd-mod-fsync_0.3-2_amd64.deb ProFTPD module mod_fsync
proftpd-mod-geoip_1.3.6-4_amd64.deb Versatile, virtual-hosting FTP daemon - GeoIP module
proftpd-mod-ldap_1.3.6-4_amd64.deb Versatile, virtual-hosting FTP daemon - LDAP module
proftpd-mod-msg_0.5-1_amd64.deb ProFTPD module mod_msg
proftpd-mod-mysql_1.3.6-4_amd64.deb Versatile, virtual-hosting FTP daemon - MySQL module
proftpd-mod-odbc_1.3.6-4_amd64.deb Versatile, virtual-hosting FTP daemon - ODBC module
Advertisement
Advertisement