primer3_2.4.0-2_amd64.deb


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Description

primer3 - tool to design flanking oligo nucleotides for DNA amplification

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename primer3_2.4.0-2_amd64.deb
Package name primer3
Package version 2.4.0
Package release 2
Package architecture amd64
Package type deb
Category universe/science
Homepage http://primer3.sourceforge.net
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 176.89 KB
Installed size 704.00 KB
Primer3 picks primers for Polymerase Chain Reactions (PCRs), considering as
criteria oligonucleotide melting temperature, size, GC content and
primer-dimer possibilities, PCR product size, positional constraints within
the source sequence, and miscellaneous other constraints. All of these
criteria are user-specifiable as constraints, and some are specifiable as
terms in an objective function that characterizes an optimal primer pair.

Alternatives

Package Version Architecture Repository
primer3_2.4.0-2_i386.deb 2.4.0 i386 Ubuntu Universe
primer3 - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5

Download

Type URL
Mirror archive.ubuntu.com
Binary Package primer3_2.4.0-2_amd64.deb
Source Package primer3

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install primer3 deb package:
    # sudo apt-get install primer3

Files

Path
/etc/primer3_config/dangle.dh
/etc/primer3_config/dangle.ds
/etc/primer3_config/loops.dh
/etc/primer3_config/loops.ds
/etc/primer3_config/stack.dh
/etc/primer3_config/stack.ds
/etc/primer3_config/stackmm.dh
/etc/primer3_config/stackmm.ds
/etc/primer3_config/tetraloop.dh
/etc/primer3_config/tetraloop.ds
/etc/primer3_config/triloop.dh
/etc/primer3_config/triloop.ds
/etc/primer3_config/tstack.dh
/etc/primer3_config/tstack2.dh
/etc/primer3_config/tstack2.ds
/etc/primer3_config/tstack_tm_inf.ds
/etc/primer3_config/interpretations/dangle_i.dh
/etc/primer3_config/interpretations/dangle_i.ds
/etc/primer3_config/interpretations/loops_i.dh
/etc/primer3_config/interpretations/loops_i.ds
/etc/primer3_config/interpretations/stack_i.dh
/etc/primer3_config/interpretations/stack_i.ds
/etc/primer3_config/interpretations/stackmm_i_mm.dh
/etc/primer3_config/interpretations/stackmm_i_mm.ds
/etc/primer3_config/interpretations/tetraloop_i.dh
/etc/primer3_config/interpretations/tetraloop_i.ds
/etc/primer3_config/interpretations/triloop_i.dh
/etc/primer3_config/interpretations/triloop_i.ds
/etc/primer3_config/interpretations/tstack2_i.dh
/etc/primer3_config/interpretations/tstack2_i.ds
/etc/primer3_config/interpretations/tstack_i.dh
/etc/primer3_config/interpretations/tstack_i.ds
/etc/primer3_config/interpretations/tstack_tm_inf_i.dh
/etc/primer3_config/interpretations/tstack_tm_inf_i.ds
/usr/bin/ntdpal
/usr/bin/ntthal
/usr/bin/oligotm
/usr/bin/primer3_core
/usr/share/doc-base/primer3-manual
/usr/share/doc/primer3/README.test
/usr/share/doc/primer3/changelog.Debian.gz
/usr/share/doc/primer3/copyright
/usr/share/doc/primer3/primer3_manual.htm
/usr/share/doc/primer3/release_notes.txt.gz
/usr/share/doc/primer3/examples/example
/usr/share/man/man1/ntdpal.1.gz
/usr/share/man/man1/ntthal.1.gz
/usr/share/man/man1/oligotm.1.gz
/usr/share/man/man1/primer3_core.1.gz

Changelog

2018-05-28 - Liubov Chuprikova <chuprikovalv@gmail.com>
primer3 (2.4.0-2) unstable; urgency=medium
[ Liubov Chuprikova ]
* Team upload.
* Skip tests that fail on big endian
Closes: #890993
* Added d/README.source with explanation why some tests are skipped
* debian/patches/p3test_fix_exit_status.patch: Fix test to show correct exit
status
[ Andreas Tille ]
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
2018-02-21 - Andreas Tille <tille@debian.org>
primer3 (2.4.0-1) unstable; urgency=medium
* New upstream version
* Secure URI in watch file
* Standards-Version: 4.1.3
* debhelper 11
2017-09-14 - Steffen Moeller <moeller@debian.org>
primer3 (2.3.7-5) unstable; urgency=medium
* d/upstream/metadata:
- Added references to registries
- yamllint cleanliness
2017-08-26 - Andreas Tille <tille@debian.org>
primer3 (2.3.7-4) unstable; urgency=medium
* Fix build with gcc-7
Closes: #853621
* Standards-Version: 4.1.0 (no changes needed)
* d/rules: use DEB_SOURCE
* hardening=+all
2017-01-13 - Andreas Tille <tille@debian.org>
primer3 (2.3.7-3) unstable; urgency=medium
[ Andreas Tille ]
* debhelper 10
* d/watch: version=4
[ Helmut Grohne ]
* Fix FTCBFS: Pass CXX as CPP (Closes: #851230)
2016-06-27 - Canberk Koç <canberkkoc@gmail.com>
primer3 (2.3.7-2) unstable; urgency=medium
* Team Upload
[ Andreas Tille ]
* Moved packaging from SVN to Git
* cme fix dpkg-control
* better hardening
* split example data for test into separate arch all package
* add lintian override for empty directories
[ Canberk Koç ]
* Autopkgtest added
* debian/rules:
- added dh_clean to override_dh_auto_test section
- sed perl interpreter path
2016-03-10 - Andreas Tille <tille@debian.org>
primer3 (2.3.7-1) unstable; urgency=medium
* New upstream version
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
2013-12-19 - Andreas Tille <tille@debian.org>
primer3 (2.3.6-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release.
* Install configuration files in /etc (first step to fix bug 702693).
* Normalised debian/control with config-model-edit.
* Use canonical VCS URLs.
[ Andreas Tille ]
* Fix watch file
* replace cdbs by dh
* debian/patches/hardening.patch: Propagate hardening options
* Standards-Version: 3.9.5 (no changes needed)
* debian/patches/primer_thermodynamic_parameters_path_2_etc.patch:
Make sure config files will be searched for in /etc/primer3_config/
instead of /opt/primer3_config/
Closes: #702693
* Verified that new upstream
Closes: #716151, #716213 
* New executable: ntthal (including manpage)
* Removed *.xml variants of manpages to reduce redundancy
2013-02-05 - Andreas Tille <tille@debian.org>
primer3 (2.3.5-1) unstable; urgency=low
New upstream release.
[ Andreas Tille ]
* debian/upstream:
- Remove duplicated entry for PMID
- Added Volume, fixed Number
- Added URL+eprint
* debian/control:
- Removed DM-Upload-Allowed
- Standards-Version: 3.9.4 (no changes needed)
* debhelper 9 (control+compat)
* debian/copyright: PD License should be avoided - bumped packaging
to same license as program itself
2012-03-22 - Charles Plessy <plessy@debian.org>
primer3 (2.3.2-1) unstable; urgency=low
* New upstream release changing some default values.
* Refreshed debian/copyright to machine-readable format version 1.0.
Note that the license of Primer3 version 2.x changed to the GPLv2 or higher.
* Spellchecked manual pages (Closes: #650477, thanks to A. Costa).
* Using Debhelper 8 (debian/control, debian/compat).
* Renamed debian/README.Debian debian/README.test as it is all about tests.
* Conforms to Policy 3.9.3 (debian/control, no other changes needed).

See Also

Package Description
primesieve-bin_7.3+ds-1ubuntu1_amd64.deb fast prime number generator C/C++ library -- bin
primesieve-doc_7.3+ds-1ubuntu1_all.deb fast prime number generator C/C++ library -- doc
primesieve_7.3+ds-1ubuntu1_amd64.deb fast prime number generator C/C++ library
primrose_6+dfsg1-4_amd64.deb compelling tile-placement puzzle game
primus-libs_0~20150328-7_amd64.deb Shared libraries for primus
primus_0~20150328-7_amd64.deb client-side GPU offloading for NVIDIA Optimus
princeprocessor_0.22-1_amd64.deb standalone password candidate generator using the PRINCE algorithm
print-manager_18.12.3-0ubuntu1_amd64.deb printer configuration and monitoring tools
printemf_1.0.11-2ubuntu1_amd64.deb Enhanced Metafile library (executable)
printer-driver-all-enforce_0.20170124_all.deb printer drivers metapackage - enforcing version
printer-driver-all_0.20170124_all.deb printer drivers metapackage
printer-driver-c2050_0.3b-8_amd64.deb printer driver for Lexmark 2050 Color Jetprinter
printer-driver-cjet_0.8.9-7_amd64.deb printer driver for Canon LBP laser printers
printer-driver-cups-pdf_3.0.1-5_amd64.deb printer driver for PDF writing via CUPS
printer-driver-dymo_1.4.0-8_amd64.deb printer driver for DYMO label printers
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