prime-phylo_1.0.11-7_amd64.deb


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Description

prime-phylo - bayesian estimation of gene trees taking the species tree into account

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename prime-phylo_1.0.11-7_amd64.deb
Package name prime-phylo
Package version 1.0.11
Package release 7
Package architecture amd64
Package type deb
Category universe/science
Homepage http://prime.sbc.su.se
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 822.88 KB
Installed size 3.30 MB
PrIME (Probabilistic Integrated Models of Evolution) is a package
supporting inference of evolutionary parameters in a Bayesian framework
using Markov chain Monte Carlo simulation. A distinguishing feature of
PrIME is that the species tree is taken into account when analyzing gene
trees.
The input data to PrIME is a multiple sequence alignment in FASTA format
and the output data contains trees in Newick format.

Alternatives

Package Version Architecture Repository
prime-phylo_1.0.11-7_i386.deb 1.0.11 i386 Ubuntu Universe
prime-phylo - - -

Requires

Name Value
libblas.so.3 -
libblas3 -
libboost-mpi1.67.0 -
libboost-serialization1.67.0 -
libc6 >= 2.23
libgcc1 >= 1:3.0
liblapack.so.3 -
liblapack3 -
libopenmpi3 -
libstdc++6 >= 5.2
libxml2 >= 2.7.4
perl:any -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package prime-phylo_1.0.11-7_amd64.deb
Source Package prime-phylo

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install prime-phylo deb package:
    # sudo apt-get install prime-phylo

Files

Path
/usr/bin/chainsaw
/usr/bin/mcmc_analysis
/usr/bin/primeDLRS
/usr/bin/primeDTLSR
/usr/bin/primeGEM
/usr/bin/primeGSRf
/usr/bin/reconcile
/usr/bin/reroot
/usr/bin/showtree
/usr/bin/tree2leafnames
/usr/bin/treesize
/usr/lib/prime-phylo/libprime-phylo-sfile.so
/usr/lib/prime-phylo/libprime-phylo.so
/usr/share/doc/prime-phylo/changelog.Debian.gz
/usr/share/doc/prime-phylo/copyright
/usr/share/man/man1/chainsaw.1.gz
/usr/share/man/man1/mcmc_analysis.1.gz
/usr/share/man/man1/primeDLRS.1.gz
/usr/share/man/man1/primeDTLSR.1.gz
/usr/share/man/man1/primeGEM.1.gz
/usr/share/man/man1/primeGSRf.1.gz
/usr/share/man/man1/reconcile.1.gz
/usr/share/man/man1/reroot.1.gz
/usr/share/man/man1/showtree.1.gz
/usr/share/man/man1/tree2leafnames.1.gz
/usr/share/man/man1/treesize.1.gz

Changelog

2018-11-04 - Andreas Tille <tille@debian.org>
prime-phylo (1.0.11-7) unstable; urgency=medium
[ Giovanni Mascellani ]
* Fix build with Boost 1.67
Closes: #912781
[ Andreas Tille ]
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Remove trailing whitespace in debian/copyright
2018-05-22 - Andreas Tille <tille@debian.org>
prime-phylo (1.0.11-6) unstable; urgency=medium
[ Juhani Numminen ]
* 'beep::' is redundant inside 'namespace beep' block
Closes: #897837
2018-05-20 - Andreas Tille <tille@debian.org>
prime-phylo (1.0.11-5) unstable; urgency=medium
[ Andreas Tille ]
* Reflect vanished download location in d/watch
* Adapt upstream name
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
[ Adrian Bunk ]
* DEB_CXXFLAGS_MAINT_APPEND = -fpermissive
Closes: #899129
2016-08-03 - Sascha Steinbiss <satta@debian.org>
prime-phylo (1.0.11-4) unstable; urgency=medium
* Team upload.
* fix FTBFS with Boost 1.60 (Closes: #833334)
Thanks to Graham Inggs for the patch.
2016-07-25 - Sascha Steinbiss <satta@debian.org>
prime-phylo (1.0.11-3) unstable; urgency=medium
* Team upload.
* Fix building with GCC 6 (Closes: #812031)
* Enable full hardening.
* Bump Standards-Version.
* Use secure Vcs-Git.
* Remove now unused Lintian override.
2014-10-17 - Andreas Tille <tille@debian.org>
prime-phylo (1.0.11-2) unstable; urgency=medium
* Add missing Vcs fields.
* cme fix dpkg-control
* Move debian/upstream to debian/upstream/metadata
2012-12-17 - Erik Sjolund <erik.sjolund@gmail.com>
prime-phylo (1.0.11-1) unstable; urgency=low
* Initial release (Closes: #684039)

See Also

Package Description
primer3-examples_2.4.0-2_all.deb tool to design flanking oligo nucleotides for DNA amplification (examples)
primer3_2.4.0-2_amd64.deb tool to design flanking oligo nucleotides for DNA amplification
primesieve-bin_7.3+ds-1ubuntu1_amd64.deb fast prime number generator C/C++ library -- bin
primesieve-doc_7.3+ds-1ubuntu1_all.deb fast prime number generator C/C++ library -- doc
primesieve_7.3+ds-1ubuntu1_amd64.deb fast prime number generator C/C++ library
primrose_6+dfsg1-4_amd64.deb compelling tile-placement puzzle game
primus-libs_0~20150328-7_amd64.deb Shared libraries for primus
primus_0~20150328-7_amd64.deb client-side GPU offloading for NVIDIA Optimus
princeprocessor_0.22-1_amd64.deb standalone password candidate generator using the PRINCE algorithm
print-manager_18.12.3-0ubuntu1_amd64.deb printer configuration and monitoring tools
printemf_1.0.11-2ubuntu1_amd64.deb Enhanced Metafile library (executable)
printer-driver-all-enforce_0.20170124_all.deb printer drivers metapackage - enforcing version
printer-driver-all_0.20170124_all.deb printer drivers metapackage
printer-driver-c2050_0.3b-8_amd64.deb printer driver for Lexmark 2050 Color Jetprinter
printer-driver-cjet_0.8.9-7_amd64.deb printer driver for Canon LBP laser printers
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