predictprotein_1.1.08-1_all.deb


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Description

predictprotein - suite of protein sequence analysis tools

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename predictprotein_1.1.08-1_all.deb
Package name predictprotein
Package version 1.1.08
Package release 1
Package architecture all
Package type deb
Category universe/science
Homepage http://www.predictprotein.org
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 46.98 KB
Installed size 165.00 KB
PredictProtein is a sequence analysis suite providing prediction of protein
structure and function.
PredictProtein takes a protein sequence as input and provides the following
per-residue, or whole protein annotations:
* secondary structure
* solvent accessibility
* multiple sequence alignments
* PROSITE sequence motifs
* low-complexity regions
* nuclear localisation signals
* regions lacking regular structure (NORS)
* unstructured loops
* transmembrane helices
* transmembrane beta barrels
* coiled-coil regions
* disulfide-bonds
* disordered regions
* B-value flexibility
* protein-protein interaction sites
* Gene Ontology terms

Alternatives

Package Version Architecture Repository
predictprotein_1.1.08-1_all.deb 1.1.08 all Ubuntu Universe
predictprotein - - -

Requires

Name Value
bioperl -
blast2 -
disulfinder -
hmmer -
hmmer2 -
librg-exception-perl -
librg-utils-perl -
make -
metastudent -
ncbi-seg -
ncoils -
norsnet -
norsp -
perl -
predictnls -
profbval -
profisis -
profphd -
proftmb -
reprof -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package predictprotein_1.1.08-1_all.deb
Source Package predictprotein

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install predictprotein deb package:
    # sudo apt-get install predictprotein

Files

Path
/usr/bin/predictprotein
/usr/share/doc/predictprotein/changelog.Debian.gz
/usr/share/doc/predictprotein/copyright
/usr/share/doc/predictprotein/examples/cad23.fasta
/usr/share/doc/predictprotein/examples/p53.fasta
/usr/share/doc/predictprotein/examples/tquick.fasta
/usr/share/doc/predictprotein/examples/tsnap_query.fasta
/usr/share/man/man1/predictprotein.1.gz
/usr/share/man/man3/RG::PP::ACL.3pm.gz
/usr/share/perl5/RG/PP/ACL.pm
/usr/share/predictprotein/MakefilePP.mk
/usr/share/predictprotein/predictproteinrc.default
/usr/share/predictprotein/helper_apps/blast2html.pl
/usr/share/predictprotein/helper_apps/filter_blastp_big.pl
/usr/share/predictprotein/helper_apps/nors.pl
/usr/share/predictprotein/helper_apps/prosite_scan.pl
/usr/share/predictprotein/resources/HtmlHr.html
/usr/share/predictprotein/resources/HtmlQuote.html

Changelog

2018-12-17 - Andreas Tille <tille@debian.org>
predictprotein (1.1.08-1) unstable; urgency=medium
* New upstream version
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
2018-10-18 - Andreas Tille <tille@debian.org>
predictprotein (1.1.07-4) unstable; urgency=medium
* pp-popularity-contest only suggested
* Remove unneeded get-orig-source target
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
2017-11-16 - Andreas Tille <tille@debian.org>
predictprotein (1.1.07-3) unstable; urgency=medium
* Moved packaging from SVN to Git
* no need to specify autoreconf when using debhelper
* Standards-Version: 4.1.1
2016-07-08 - Tatiana Malygina <merlettaia@gmail.com>
predictprotein (1.1.07-2) unstable; urgency=medium
[ Tatiana Malygina ]
* Team upload.
* cme fix dpkg-control
* add hardening
[ Andreas Tille ]
* d/watch: version=4
* debhelper 10
2015-07-03 - Andreas Tille <tille@debian.org>
predictprotein (1.1.07-1) unstable; urgency=medium
* New upstream version
* Build-Depends: libmodule-build-perl
Closes: #789640
2014-10-02 - Andreas Tille <tille@debian.org>
predictprotein (1.1.06-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* debhelper 9
* d/copyright: Move "Files: *" section on top to fit DEP5
2014-04-02 - Andreas Tille <tille@debian.org>
predictprotein (1.1.01-1) unstable; urgency=low
[ Guy Yachdav ]
* New upstream release: integrated somena(1)
[ Andreas Tille ]
* Priority: optional
* Removed README.source since this it just explains usual practice
* cme fix dpkg-control
* correct DEP5 syntax and content of debian/copyright
2014-03-28 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.99-1) UNRELEASED; urgency=low
* New upstream release: integrated reprof(1)
2014-03-10 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.98) UNRELEASED; urgency=low
* New upstream release: integrated TMSEG(1)
2014-02-26 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.97~bpo70+1) UNRELEASED; urgency=low
* New upstream release: mapped lc3 extensions to method.

See Also

Package Description
prelink_0.0.20131005-1_amd64.deb ELF prelinking utility to speed up dynamic linking
preload_0.6.4-2build1_amd64.deb adaptive readahead daemon
prelude-correlator_4.1.1-2_all.deb Security Information and Events Management System [ Correlator ]
prelude-lml-rules_4.1.0-1_all.deb Security Information and Events Management System [ LML Rules ]
prelude-lml_4.1.0-2ubuntu1_amd64.deb Security Information and Events Management System [ Log Agent ]
prelude-manager_4.1.1-2_amd64.deb Security Information and Events Management System [ Manager ]
prelude-notify_0.9.1-1.1_all.deb Security Information Management System [ Desktop Notifier ]
prelude-utils_4.1.0-4.2_amd64.deb Security Information and Events Management system [ Utils ]
preludedb-utils_4.1.0-2ubuntu3_amd64.deb Security Information and Events Management System [ Library utils ]
premake4_4.3+repack1-2build1_amd64.deb cross-platform build script generator
prepair-data_0.7.1-3build1_all.deb polygon repair tool -- example data
prepair_0.7.1-3build1_amd64.deb polygon repair tool
preprocess_1.1.0+ds-1build1_all.deb portable multi-language file preprocessor
prerex_6.5.4-1_amd64.deb course prerequisite chart editor for LaTeX/TikZ
presage-dbus_0.9.1-2.1ubuntu5_all.deb intelligent predictive text entry platform (D-Bus service)
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