porechop_0.2.4+dfsg-1_amd64.deb


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Description

porechop - adapter trimmer for Oxford Nanopore reads

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename porechop_0.2.4+dfsg-1_amd64.deb
Package name porechop
Package version 0.2.4+dfsg
Package release 1
Package architecture amd64
Package type deb
Category universe/science
Homepage https://rrwick.github.io/Porechop
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 54.73 KB
Installed size 237.00 KB
Porechop is a tool for finding and removing adapters from Oxford
Nanopore reads. Adapters on the ends of reads are trimmed off, and
when a read has an adapter in its middle, it is treated as chimeric
and chopped into separate reads. Porechop performs thorough
alignments to effectively find adapters, even at low sequence
identity.
Porechop also supports demultiplexing of Nanopore reads that were
barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid
Barcoding Kit.

Alternatives

Package Version Architecture Repository
porechop_0.2.4+dfsg-1_i386.deb 0.2.4+dfsg i386 Ubuntu Universe
porechop - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
python3 >= 3~
python3:any -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package porechop_0.2.4+dfsg-1_amd64.deb
Source Package porechop

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install porechop deb package:
    # sudo apt-get install porechop

Files

Path
/usr/bin/porechop
/usr/lib/python3/dist-packages/porechop/__init__.py
/usr/lib/python3/dist-packages/porechop/adapters.py
/usr/lib/python3/dist-packages/porechop/cpp_function_wrappers.py
/usr/lib/python3/dist-packages/porechop/cpp_functions.so
/usr/lib/python3/dist-packages/porechop/misc.py
/usr/lib/python3/dist-packages/porechop/nanopore_read.py
/usr/lib/python3/dist-packages/porechop/porechop.py
/usr/lib/python3/dist-packages/porechop/version.py
/usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/not-zip-safe
/usr/lib/python3/dist-packages/porechop-0.2.4.egg-info/top_level.txt
/usr/share/doc/porechop/changelog.Debian.gz
/usr/share/doc/porechop/copyright
/usr/share/man/man1/porechop.1.gz

Changelog

2018-10-23 - Steffen Moeller <moeller@debian.org>
porechop (0.2.4+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version.
2018-09-28 - Mattia Rizzolo <mattia@debian.org>
porechop (0.2.3+dfsg-3) unstable; urgency=medium
* Team upload.
* Add patch to fix FTBFS in the clean target.  Closes: #909761
2018-09-27 - Mattia Rizzolo <mattia@debian.org>
porechop (0.2.3+dfsg-2) unstable; urgency=medium
* Team upload.
* Properly use the dh_python3 options to override its behaviour, instead
of being clever with it.
* Build only for the default Python3 version.
The software can't cope with being placed in odd places, so can't use
the multiple python version support that Debian has.
* Build the package using pybuild.
+ Move all the files to the usual location for Python3 software.
+ Install the entry point directly in /usr/bin instead of symlinking.
+ Explicitly disable the tests (that before weren't even tried).
* Set Rules-Requires-Root:no.
2018-08-27 - Andreas Tille <tille@debian.org>
porechop (0.2.3+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #890112)

See Also

Package Description
poretools-data_0.6.0+dfsg-3_all.deb toolkit for nanopore nucleotide sequencing data -- sample datasets
poretools_0.6.0+dfsg-3_all.deb toolkit for nanopore nucleotide sequencing data
porg_0.10-1.1_amd64.deb Package manager/organizer for software installed from source
portabase_2.1+git20120910-1.1_amd64.deb Easy-to-use personal database application
portaudio19-dev_19.6.0-1_amd64.deb Portable audio I/O - development files
portaudio19-doc_19.6.0-1_all.deb Portable audio I/O - documentation
portreserve_0.0.4-1build1_amd64.deb Port reservation program
portsentry_1.2-14build1_amd64.deb Portscan detection daemon
posh_0.13.2_amd64.deb Policy-compliant Ordinary SHell
posixtestsuite_1.5.2-8_amd64.deb POSIX conformance test suite report log
post-el_2.6-2_all.deb emacs major mode for editing mail
postal_0.75_amd64.deb SMTP benchmark - the mad postman
postbooks-schema-common_4.11.3-1_all.deb multi-user accounting / CRM / ERP suite (demo database)
postbooks-schema-demo_4.11.3-1_all.deb multi-user accounting / CRM / ERP suite (demo database)
postbooks-schema-empty_4.11.3-1_all.deb multi-user accounting / CRM / ERP suite (empty database)
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