phylip_3.697+dfsg-1_amd64.deb


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Description

phylip - package of programs for inferring phylogenies

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename phylip_3.697+dfsg-1_amd64.deb
Package name phylip
Package version 3.697+dfsg
Package release 1
Package architecture amd64
Package type deb
Category universe/science
Homepage http://evolution.genetics.washington.edu/phylip.html
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 919.66 KB
Installed size 5.38 MB
The PHYLogeny Inference Package is a package of programs for inferring
phylogenies (evolutionary trees) from sequences.
Methods that are available in the package include parsimony, distance
matrix, and likelihood methods, including bootstrapping and consensus
trees. Data types that can be handled include molecular sequences, gene
frequencies, restriction sites, distance matrices, and 0/1 discrete
characters.

Alternatives

Package Version Architecture Repository
phylip_3.697+dfsg-1_i386.deb 3.697+dfsg i386 Ubuntu Universe
phylip - - -

Requires

Name Value
libc6 >= 2.14

Download

Type URL
Mirror archive.ubuntu.com
Binary Package phylip_3.697+dfsg-1_amd64.deb
Source Package phylip

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install phylip deb package:
    # sudo apt-get install phylip

Files

Path
/usr/bin/DrawGram
/usr/bin/DrawTree
/usr/bin/phylip
/usr/lib/phylip/bin/Consense
/usr/lib/phylip/bin/clique
/usr/lib/phylip/bin/consense
/usr/lib/phylip/bin/contml
/usr/lib/phylip/bin/contrast
/usr/lib/phylip/bin/dnacomp
/usr/lib/phylip/bin/dnadist
/usr/lib/phylip/bin/dnainvar
/usr/lib/phylip/bin/dnaml
/usr/lib/phylip/bin/dnamlk
/usr/lib/phylip/bin/dnamove
/usr/lib/phylip/bin/dnapars
/usr/lib/phylip/bin/dnapenny
/usr/lib/phylip/bin/dollop
/usr/lib/phylip/bin/dolmove
/usr/lib/phylip/bin/dolpenny
/usr/lib/phylip/bin/drawgram
/usr/lib/phylip/bin/drawtree
/usr/lib/phylip/bin/factor
/usr/lib/phylip/bin/fitch
/usr/lib/phylip/bin/gendist
/usr/lib/phylip/bin/kitsch
/usr/lib/phylip/bin/mix
/usr/lib/phylip/bin/move
/usr/lib/phylip/bin/neighbor
/usr/lib/phylip/bin/pars
/usr/lib/phylip/bin/penny
/usr/lib/phylip/bin/proml
/usr/lib/phylip/bin/promlk
/usr/lib/phylip/bin/protdist
/usr/lib/phylip/bin/protpars
/usr/lib/phylip/bin/restdist
/usr/lib/phylip/bin/restml
/usr/lib/phylip/bin/retree
/usr/lib/phylip/bin/seqboot
/usr/lib/phylip/bin/treedist
/usr/lib/x86_64-linux-gnu/libdrawgram.so
/usr/lib/x86_64-linux-gnu/libdrawtree.so
/usr/share/bash-completion/completions/phylip
/usr/share/doc/phylip/README.Debian
/usr/share/doc/phylip/changelog.Debian.gz
/usr/share/doc/phylip/copyright
/usr/share/doc/phylip/examples/README
/usr/share/doc/phylip/examples/infile
/usr/share/doc/phylip/examples/treefile
/usr/share/doc/phylip/examples/tests/Makefile
/usr/share/doc/phylip/examples/tests/distance.data
/usr/share/doc/phylip/examples/tests/dna.data
/usr/share/doc/phylip/examples/tests/dnaml.ok
/usr/share/doc/phylip/examples/tests/dnapars.ok
/usr/share/doc/phylip/examples/tests/neighbor.ok
/usr/share/doc/phylip/examples/tests/neighbor.version-3.5.x
/usr/share/doc/phylip/examples/tests/prot.data
/usr/share/doc/phylip/examples/tests/tree.data
/usr/share/java/DrawTree-3.697+dfsg.jar
/usr/share/java/DrawTree.jar
/usr/share/lintian/overrides/phylip
/usr/share/man/man1/phylip.1.gz
/usr/share/phylip/font1
/usr/share/phylip/font2
/usr/share/phylip/font3
/usr/share/phylip/font4
/usr/share/phylip/font5
/usr/share/phylip/font6
/usr/share/phylip/fontfile

Changelog

2018-10-29 - Andreas Tille <tille@debian.org>
phylip (1:3.697+dfsg-1) unstable; urgency=medium
* Fix watch file
[ Steffen Moeller ]
* d/upstream/metadata: Added references to registries.
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Drop useless get-orig-source target
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/control
* Do not parse d/changelog
2016-12-16 - Andreas Tille <tille@debian.org>
phylip (1:3.696+dfsg-5) unstable; urgency=medium
* Bioperl-run expects executable named Consense
* d/rules: Does not reliably build with debhelper compat level 10
automatic --parallel feature so set --no-parallel
2016-12-16 - Andreas Tille <tille@debian.org>
phylip (1:3.696+dfsg-4) unstable; urgency=medium
* Bioperl-run expects executables named DrawGram and DrawTree.  Since
this might be expected by other tools to, the spelling is adjusted
* debhelper 10
* d/watch: version=4
2016-07-23 - Canberk Koç <canberkkoc@gmail.com>
phylip (1:3.696+dfsg-3) unstable; urgency=medium
* Team upload
[ Andreas Tille ]
* Moved packaging from SVN to Git
* cme fix dpkg-control
* hardening=+all
* install bash completions to usr/share/bash-completion/completions
* fix java wrappers
[ Canberk Koç ]
* autopkgtest added
2015-04-26 - Andreas Tille <tille@debian.org>
phylip (1:3.696+dfsg-2) unstable; urgency=medium
* Add missing optimisation flags (Thanks to Atanas Kumbarov
<kumbarov@gmail.com> for the patch)
Closes: #783354
* cme fix dpkg-control
* Delete unused lintian override
* d/watch: Fix version mangling
2014-09-17 - Andreas Tille <tille@debian.org>
phylip (1:3.696+dfsg-1) unstable; urgency=medium
* New upstream version now with free license
* cme fix dpkg-control
* removed redundant README.source
* d/copyright:
- DEP5 now with BSD-2-Clause license
- exclude some binaries without source which are not needed
* Add bash_completion
2013-08-07 - Andreas Tille <tille@debian.org>
phylip (1:3.695-1) unstable; urgency=low
* New upstream version
* debian/control:
- use anonscm in Vcs fields
- cme fix dpkg-control
- debhelper 9
- debian/source/format: 3.0 (quilt)
* Upstream changed build system - this chance was used to switch from
cdbs to dh (patches were changed)
* Lintian overrides
2009-09-11 - Andreas Tille <tille@debian.org>
phylip (1:3.69-1) unstable; urgency=low
* New upstream release
* debian/control:
- Fixed Vcs-Svn (missing svn/)
- Updated Standards-Version to 3.8.3 (README.source)
- Droped [Biology] from short description
* Debhelper 7
2008-11-01 - Manuel Prinz <manuel@debian.org>
phylip (1:3.68-2) unstable; urgency=low
* debian/control: Added myself to Uploaders. Vcs-* fields now point to
trunk.
* Simplified build process by removing 01_Makefile.patch and adjusting
debian/rules. Removed commented out code from debian/rules.
* Added a patch that prevents treedist from writing empty files on amd64.
2008-08-17 - Andreas Tille <tille@debian.org>
phylip (1:3.68-1) unstable; urgency=low
* New upstream version

See Also

Package Description
phyml_3.3.20180621-2ubuntu1_amd64.deb Phylogenetic estimation using Maximum Likelihood
physamp_1.1.0-1_amd64.deb sample sequence alignment corresponding to phylogeny
physlock_13-1_amd64.deb lightweight Linux console locking tool
phyutility_2.7.3+dfsg-2_amd64.deb simple analyses or modifications on both phylogenetic trees and data matrices
phyx_0.999+ds-1_amd64.deb UNIX-style phylogenetic analyses on trees and sequences
pi_1.3.4-4_amd64.deb Compute Archimedes' constant Pi to arbitrary precision
pia_3.104-1_amd64.deb movie player for xawtv
pianobar_2019.02.14-1_amd64.deb console based player for Pandora radio
pianobooster_0.6.7~svn156-1_amd64.deb learn the piano just by playing a game
picard-tools_2.18.25+dfsg-2_amd64.deb Command line tools to manipulate SAM and BAM files
picard_2.1.2-1_amd64.deb Next-Generation MusicBrainz audio files tagger
pick_2.0.2-1_amd64.deb utility to choose one option from a set of choices
picmi_18.12.3-0ubuntu1_amd64.deb Number logic game
picocom_3.1-2_amd64.deb minimal dumb-terminal emulation program
picolisp_18.12-1_amd64.deb Lisp interpreter and application server framework
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