pbsim - simulator for PacBio sequencing reads

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename pbsim_1.0.3+git20180330.e014b1d+dfsg-1_amd64.deb
Package name pbsim
Package version 1.0.3+git20180330.e014b1d+dfsg
Package release 1
Package architecture amd64
Package type deb
Category universe/science
Homepage https://github.com/pfaucon/PBSIM-PacBio-Simulator
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 24.57 KB
Installed size 100.00 KB
PacBio DNA sequencers produce two types of characteristic reads: CCS
(short and low error rate) and CLR (long and high error rate), both of
which could be useful for de novo assembly of genomes. PBSIM simulates
those PacBio reads from a reference sequence by using either a model-based
or sampling-based simulation. Simulated reads are useful, for example, when
developing or evaluating sequence assemblers targeted at PacBio data.


Package Version Architecture Repository
pbsim_1.0.3+git20180330.e014b1d+dfsg-1_i386.deb 1.0.3+git20180330.e014b1d+dfsg i386 Ubuntu Universe
pbsim - - -


Name Value
libc6 >= 2.14


Type URL
Mirror archive.ubuntu.com
Binary Package pbsim_1.0.3+git20180330.e014b1d+dfsg-1_amd64.deb
Source Package pbsim

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pbsim deb package:
    # sudo apt-get install pbsim




2018-10-31 - Andreas Tille <tille@debian.org>
pbsim (1.0.3+git20180330.e014b1d+dfsg-1) unstable; urgency=medium
* Team upload.
* Add watch file using git mode
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
* Homepage moved from googlecode to github
* Drop unneeded lintian-override
2017-01-31 - Sascha Steinbiss <satta@debian.org>
pbsim (1.0.3-3) unstable; urgency=medium
* Fix compiling with GCC 7.
* Update uploader email address.
* Bump Standards-Version.
2016-03-17 - Sascha Steinbiss <sascha@steinbiss.name>
pbsim (1.0.3-2) unstable; urgency=medium
* switch man page building to asciidoctor from ronn
- get reproducible output
- ronn is unmaintained
* bump Standards-Version
* enable full hardening
* disable watchfile
2016-01-24 - Sascha Steinbiss <sascha@steinbiss.name>
pbsim (1.0.3-1) unstable; urgency=low
* Initial release (Closes: #812526)

See Also

Package Description
pbuilder-scripts_22_all.deb Wrapper scripts for pbuilder
pbuilder_0.230.4_all.deb personal package builder for Debian packages
pbzip2_1.1.9-1build1_amd64.deb parallel bzip2 implementation
pcal_4.11.0-3build1_amd64.deb generate Postscript calendars without X
pcalendar_3.4.1-3_all.deb track menstrual cycles and predict fertility periods
pcapfix_1.1.4-2_amd64.deb repairs broken pcap and pcapng files
pcaputils_0.8-1build1_amd64.deb specialized libpcap utilities
pcb-common_4.2.0-2_all.deb printed circuit board (pcb) design program - common files
pcb-gtk_4.2.0-2_amd64.deb printed circuit board (pcb) design program - GTK+ interface
pcb-lesstif_4.2.0-2_amd64.deb printed circuit board (pcb) design program - LessTif interface
pcb-rnd_2.1.1-1_amd64.deb Modular Printed Circuit Board layout tool
pcb2gcode_1.1.4-git20120902-1.1build3_amd64.deb command-line tool for engraving PCBs using CNCs
pcb_4.2.0-2_all.deb printed circuit board (pcb) design program - metapackage
pcc_1.2.0~DEVEL+20181202-1_amd64.deb Portable C Compiler
pccts_1.33MR33-6build1_amd64.deb The Purdue Compiler Construction Tool Set (PCCTS)