pbalign - map Pacific Biosciences reads to reference DNA sequences

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename pbalign_0.3.2-1_all.deb
Package name pbalign
Package version 0.3.2
Package release 1
Package architecture all
Package type deb
Category universe/python
Homepage https://github.com/PacificBiosciences/pbalign
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 8.51 KB
Installed size 44.00 KB
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
This package is part of the SMRTAnalysis suite.


Package Version Architecture Repository
pbalign_0.3.2-1_all.deb 0.3.2 all Ubuntu Universe
pbalign - - -


Name Value
blasr >= 5.3+0
python-pbalign = 0.3.2-1
python-pkg-resources -
python:any -


Type URL
Mirror archive.ubuntu.com
Binary Package pbalign_0.3.2-1_all.deb
Source Package pbalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pbalign deb package:
    # sudo apt-get install pbalign




2019-01-26 - Steffen Moeller <moeller@debian.org>
pbalign (0.3.2-1) unstable; urgency=medium
* Team upload
* Standards-Version: 4.2.1
* d/rules: clean up all build remnants
* TODO: Python3-version, added README.Debian as a reminder
2018-10-31 - Andreas Tille <tille@debian.org>
pbalign (0.3.1-1) unstable; urgency=medium
* Team upload.
* Add watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Testsuite: autopkgtest-pkg-python
* Secure URI in copyright format
* Remove trailing whitespace in debian/control
* Build-Depends: s/python-sphinx/python3-sphinx/
* pbalign versioned depends: python-pbalign (= ${source:Version})
* Create manpages before building package
2017-01-15 - Afif Elghraoui <afif@debian.org>
pbalign (0.3.0-1) unstable; urgency=medium
* New upstream release (corresponds to smrtanalysis-4.0.0 tag)
* Readability improvements and clean-ups in d/control and d/rules
* Update email address and copyright year
* Bump Standards-Version to 3.9.8
* Use encrypted protocols for VCS URLs
* Add build-dependency on pbcommand
* Drop patch applied upstream
* Don't install LICENSES file
* Set blasr minimum version
2015-09-07 - Afif Elghraoui <afif@ghraoui.name>
pbalign (0.2.0-1) unstable; urgency=low
* Initial release (Closes: #797675)

See Also

Package Description
pbbamtools_0.19.0+dfsg-4_amd64.deb processing Pacific Biosciences binary alignment/map files
pbbarcode_0.8.0-5_amd64.deb annotate PacBio sequencing reads with barcode information
pbdagcon_0.3+git20161121.0000000+ds-1.1_amd64.deb sequence consensus using directed acyclic graphs
pbgenomicconsensus_2.3.2-5_all.deb Pacific Biosciences variant and consensus caller
pbh5tools_0.8.0+git20170929.58d54ff+dfsg-1_all.deb tools for manipulating Pacific Biosciences HDF5 files
pbsim_1.0.3+git20180330.e014b1d+dfsg-1_amd64.deb simulator for PacBio sequencing reads
pbuilder-scripts_22_all.deb Wrapper scripts for pbuilder
pbuilder_0.230.4_all.deb personal package builder for Debian packages
pbzip2_1.1.9-1build1_amd64.deb parallel bzip2 implementation
pcal_4.11.0-3build1_amd64.deb generate Postscript calendars without X
pcalendar_3.4.1-3_all.deb track menstrual cycles and predict fertility periods
pcapfix_1.1.4-2_amd64.deb repairs broken pcap and pcapng files
pcaputils_0.8-1build1_amd64.deb specialized libpcap utilities
pcb-common_4.2.0-2_all.deb printed circuit board (pcb) design program - common files
pcb-gtk_4.2.0-2_amd64.deb printed circuit board (pcb) design program - GTK+ interface