norsnet_1.0.17-4_all.deb


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Description

norsnet - tool to identify unstructured loops in proteins

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename norsnet_1.0.17-4_all.deb
Package name norsnet
Package version 1.0.17
Package release 4
Package architecture all
Package type deb
Category universe/science
Homepage https://www.rostlab.org/owiki/index.php/Norsnet
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 42.76 KB
Installed size 207.00 KB
NORSnet can distinguish between very long contiguous segments with
non-regular secondary structure (NORS regions) and well-folded proteins.
NORSnet was trained on predicted information rather than on experimental data.
This allows NORSnet to reach into regions in sequence space that are not
covered by specialized disorder predictors.  One disadvantage of this approach
is that it is not optimal for the identification of the "average" disordered
region.
NORSnet takes the following input, further described on norsnet(1):
* a protein sequence in a FASTA file
* secondary structure and solvent accessibility prediction by prof(1)
* an HSSP file
* flexible/rigid residues prediction by profbval(1)

Alternatives

Package Version Architecture Repository
norsnet_1.0.17-4_all.deb 1.0.17 all Ubuntu Universe
norsnet - - -

Requires

Name Value
profnet-norsnet -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package norsnet_1.0.17-4_all.deb
Source Package norsnet

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install norsnet deb package:
    # sudo apt-get install norsnet

Files

Path
/usr/bin/norsnet
/usr/share/doc/norsnet/changelog.Debian.gz
/usr/share/doc/norsnet/copyright
/usr/share/doc/norsnet/examples/cad23-fil.hssp
/usr/share/doc/norsnet/examples/cad23-fil.rdbProf
/usr/share/doc/norsnet/examples/cad23.f
/usr/share/doc/norsnet/examples/cad23.norsnet.gz
/usr/share/doc/norsnet/examples/cad23.profbval
/usr/share/man/man1/norsnet.1.gz
/usr/share/norsnet/scr/NORSnet.pl
/usr/share/norsnet/scr/createDataFile.pl
/usr/share/norsnet/scr/jct50-short

Changelog

2018-10-18 - Andreas Tille <tille@debian.org>
norsnet (1.0.17-4) unstable; urgency=medium
* pp-popularity-contest only suggested
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Drop get-orig-source target
2017-11-16 - Andreas Tille <tille@debian.org>
norsnet (1.0.17-3) unstable; urgency=medium
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
2016-01-08 - Andreas Tille <tille@debian.org>
norsnet (1.0.17-2) unstable; urgency=medium
* Add myself to Uploaders
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Priority: optional
* debhelper 9
* DEP5 fix
2013-09-30 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.17-1) unstable; urgency=low
* New upstream release.
* Upstream fixes "FTBFS: POD errors" (Closes: #724159).
2012-08-14 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.16-1) unstable; urgency=low
[ Christian Mertes ]
* Packaged for Debian (Closes: #681108)
2011-02-28 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.10) stable; urgency=low
* warning when pp-popcon is not installed
2011-02-18 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.9) stable; urgency=low
* bugzilla link corrected
* pp-popularity-contest
2011-01-13 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.8) stable; urgency=low
* createDataFile.pl too restrictive regexp bug fixed
2010-06-30 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.7-1) stable; urgency=low
* New upstream release
2010-06-30 - Laszlo Kajan <lkajan@rostlab.org>
norsnet (1.0.7)
* Silence in non-debug mode - correctly this time

See Also

Package Description
norsp_1.0.6-4_all.deb predictor of non-regular secondary structure
notary_0.6.1~ds1-3_amd64.deb tool for running and interacting with trusted collections
note_1.3.26-2_all.deb small program managing notes from commandline
notification-daemon_3.20.0-4_amd64.deb daemon for displaying passive pop-up notifications
notify-osd-icons_0.8+15.10.20151016.2-0ubuntu1_all.deb Notify-OSD icons
notify-osd_0.9.35+16.04.20160415-0ubuntu3_amd64.deb daemon that displays passive pop-up notifications
notmuch-addrlookup_9-1_amd64.deb Address lookup tool for Notmuch
notmuch-emacs_0.28.3-1ubuntu1_all.deb thread-based email index, search and tagging (transitional package)
notmuch-mutt_0.28.3-1ubuntu1_all.deb thread-based email index, search and tagging (Mutt interface)
notmuch-vim_0.28.3-1ubuntu1_all.deb thread-based email index, search and tagging (vim interface)
notmuch_0.28.3-1ubuntu1_amd64.deb thread-based email index, search and tagging
nova-ajax-console-proxy_19.0.0-0ubuntu2_all.deb OpenStack Compute - AJAX console proxy - transitional package
nova-api-metadata_19.0.0-0ubuntu2_all.deb OpenStack Compute - metadata API frontend
nova-api-os-compute_19.0.0-0ubuntu2_all.deb OpenStack Compute - OpenStack Compute API frontend
nova-api-os-volume_19.0.0-0ubuntu2_all.deb OpenStack Compute - OpenStack Volume API frontend
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