neobio_0.0.20030929-4_all.deb


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Description

neobio - computes alignments of amino acid and nucleotide sequences

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename neobio_0.0.20030929-4_all.deb
Package name neobio
Package version 0.0.20030929
Package release 4
Package architecture all
Package type deb
Category universe/science
Homepage http://neobio.sourceforge.net/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 284.84 KB
Installed size 2.35 MB
Library and graphical user interface for pairwise sequence alignments.
Implementation of the dynamic programming methods of Needleman & Wunsch
(global alignment) and Smith & Waterman (local alignment).

Alternatives

Package Version Architecture Repository
neobio_0.0.20030929-4_all.deb 0.0.20030929 all Ubuntu Universe
neobio - - -

Requires

Name Value
default-jre -
java-wrappers -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package neobio_0.0.20030929-4_all.deb
Source Package neobio

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install neobio deb package:
    # sudo apt-get install neobio

Files

Path
/usr/bin/neobio
/usr/lib/neobio/data/blosum45.txt
/usr/lib/neobio/data/blosum62.txt
/usr/lib/neobio/data/blosum80.txt
/usr/lib/neobio/data/dna01a.txt
/usr/lib/neobio/data/dna01b.txt
/usr/lib/neobio/data/dna02a.txt
/usr/lib/neobio/data/dna02b.txt
/usr/lib/neobio/data/dna03a.txt
/usr/lib/neobio/data/dna03b.txt
/usr/lib/neobio/data/dna04a.txt
/usr/lib/neobio/data/dna04b.txt
/usr/lib/neobio/data/dna05a.txt
/usr/lib/neobio/data/dna05b.txt
/usr/lib/neobio/data/dna06a.txt
/usr/lib/neobio/data/dna06b.txt
/usr/lib/neobio/data/dna07a.txt
/usr/lib/neobio/data/dna07b.txt
/usr/lib/neobio/data/dna08a.txt
/usr/lib/neobio/data/dna08b.txt
/usr/lib/neobio/data/dna09a.txt
/usr/lib/neobio/data/dna09b.txt
/usr/lib/neobio/data/dna10a.txt
/usr/lib/neobio/data/dna10b.txt
/usr/lib/neobio/data/dna11a.txt
/usr/lib/neobio/data/dna11b.txt
/usr/lib/neobio/data/dna12a.txt
/usr/lib/neobio/data/dna12b.txt
/usr/lib/neobio/data/dna13a.txt
/usr/lib/neobio/data/dna13b.txt
/usr/lib/neobio/data/dna14a.txt
/usr/lib/neobio/data/dna14b.txt
/usr/lib/neobio/data/dna15a.txt
/usr/lib/neobio/data/dna15b.txt
/usr/lib/neobio/data/dna16a.txt
/usr/lib/neobio/data/dna16b.txt
/usr/lib/neobio/data/dna17a.txt
/usr/lib/neobio/data/dna17b.txt
/usr/lib/neobio/data/dna18a.txt
/usr/lib/neobio/data/dna18b.txt
/usr/lib/neobio/data/dna19a.txt
/usr/lib/neobio/data/dna19b.txt
/usr/lib/neobio/data/dna20a.txt
/usr/lib/neobio/data/dna20b.txt
/usr/lib/neobio/data/dna21a.txt
/usr/lib/neobio/data/dna21b.txt
/usr/lib/neobio/data/dna22a.txt
/usr/lib/neobio/data/dna22b.txt
/usr/lib/neobio/data/dna23a.txt
/usr/lib/neobio/data/dna23b.txt
/usr/lib/neobio/data/dna24a.txt
/usr/lib/neobio/data/dna24b.txt
/usr/lib/neobio/data/dna25a.txt
/usr/lib/neobio/data/dna25b.txt
/usr/lib/neobio/data/dna26a.txt
/usr/lib/neobio/data/dna26b.txt
/usr/lib/neobio/data/dna27a.txt
/usr/lib/neobio/data/dna27b.txt
/usr/lib/neobio/data/dna28a.txt
/usr/lib/neobio/data/dna28b.txt
/usr/lib/neobio/data/dna29a.txt
/usr/lib/neobio/data/dna29b.txt
/usr/lib/neobio/data/dna30a.txt
/usr/lib/neobio/data/dna30b.txt
/usr/lib/neobio/data/dna31a.txt
/usr/lib/neobio/data/dna31b.txt
/usr/lib/neobio/data/dna32a.txt
/usr/lib/neobio/data/dna32b.txt
/usr/lib/neobio/data/dna38a.txt
/usr/lib/neobio/data/dna38b.txt
/usr/lib/neobio/data/dna39a.txt
/usr/lib/neobio/data/dna39b.txt
/usr/lib/neobio/data/dnamatrix.txt
/usr/lib/neobio/data/hep.html
/usr/lib/neobio/data/hep.txt
/usr/lib/neobio/data/hepatitis_a.txt
/usr/lib/neobio/data/hepatitis_b.txt
/usr/lib/neobio/data/human_chromosome_y.txt
/usr/lib/neobio/data/pam250.txt
/usr/lib/neobio/data/pam30.txt
/usr/lib/neobio/data/pam70.txt
/usr/lib/neobio/data/prot01a.txt
/usr/lib/neobio/data/prot01b.txt
/usr/lib/neobio/data/prot02a.txt
/usr/lib/neobio/data/prot02b.txt
/usr/lib/neobio/data/prot03a.txt
/usr/lib/neobio/data/prot03b.txt
/usr/lib/neobio/data/prot04a.txt
/usr/lib/neobio/data/prot04b.txt
/usr/lib/neobio/data/prot05a.txt
/usr/lib/neobio/data/prot05b.txt
/usr/lib/neobio/data/prot06a.txt
/usr/lib/neobio/data/prot06b.txt
/usr/lib/neobio/data/prot07a.txt
/usr/lib/neobio/data/prot07b.txt
/usr/lib/neobio/data/prot08a.txt
/usr/lib/neobio/data/prot08b.txt
/usr/lib/neobio/data/prot09a.txt
/usr/lib/neobio/data/prot09b.txt
/usr/lib/neobio/data/prot10a.txt
/usr/lib/neobio/data/prot10b.txt
/usr/lib/neobio/data/prot11a.txt
/usr/lib/neobio/data/prot11b.txt
/usr/lib/neobio/data/prot12a.txt
/usr/lib/neobio/data/prot12b.txt
/usr/lib/neobio/data/prot13a.txt
/usr/lib/neobio/data/prot13b.txt
/usr/lib/neobio/data/prot14a.txt
/usr/lib/neobio/data/prot14b.txt
/usr/lib/neobio/data/rat_chromosome_20.txt
/usr/share/applications/neobio.desktop
/usr/share/doc-base/neobio
/usr/share/doc/neobio/changelog.Debian.gz
/usr/share/doc/neobio/copyright
/usr/share/doc/neobio/html/allclasses-frame.html
/usr/share/doc/neobio/html/allclasses-noframe.html
/usr/share/doc/neobio/html/constant-values.html
/usr/share/doc/neobio/html/help-doc.html
/usr/share/doc/neobio/html/index-all.html
/usr/share/doc/neobio/html/index.html
/usr/share/doc/neobio/html/overview-frame.html
/usr/share/doc/neobio/html/overview-summary.html
/usr/share/doc/neobio/html/overview-tree.html
/usr/share/doc/neobio/html/package-list
/usr/share/doc/neobio/html/packages.html
/usr/share/doc/neobio/html/serialized-form.html
/usr/share/doc/neobio/html/stylesheet.css
/usr/share/doc/neobio/html/neobio/alignment/AlignmentBlock.html
/usr/share/doc/neobio/html/neobio/alignment/BasicScoringScheme.html
/usr/share/doc/neobio/html/neobio/alignment/CharSequence.html
/usr/share/doc/neobio/html/neobio/alignment/CrochemoreLandauZivUkelson.html
/usr/share/doc/neobio/html/neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment.html
/usr/share/doc/neobio/html/neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment.html
/usr/share/doc/neobio/html/neobio/alignment/Factor.html
/usr/share/doc/neobio/html/neobio/alignment/FactorSequence.html
/usr/share/doc/neobio/html/neobio/alignment/IncompatibleScoringSchemeException.html
/usr/share/doc/neobio/html/neobio/alignment/InvalidScoringMatrixException.html
/usr/share/doc/neobio/html/neobio/alignment/InvalidSequenceException.html
/usr/share/doc/neobio/html/neobio/alignment/LocalAlignmentBlock.html
/usr/share/doc/neobio/html/neobio/alignment/Matrix.html
/usr/share/doc/neobio/html/neobio/alignment/NeedlemanWunsch.html
/usr/share/doc/neobio/html/neobio/alignment/OutMatrix.html
/usr/share/doc/neobio/html/neobio/alignment/PairwiseAlignment.html
/usr/share/doc/neobio/html/neobio/alignment/PairwiseAlignmentAlgorithm.html
/usr/share/doc/neobio/html/neobio/alignment/ScoringMatrix.html
/usr/share/doc/neobio/html/neobio/alignment/ScoringScheme.html
/usr/share/doc/neobio/html/neobio/alignment/Smawk.html
/usr/share/doc/neobio/html/neobio/alignment/SmithWaterman.html
/usr/share/doc/neobio/html/neobio/alignment/Trie.html
/usr/share/doc/neobio/html/neobio/alignment/package-frame.html
/usr/share/doc/neobio/html/neobio/alignment/package-summary.html
/usr/share/doc/neobio/html/neobio/alignment/package-tree.html
/usr/share/doc/neobio/html/neobio/gui/AboutDialog.html
/usr/share/doc/neobio/html/neobio/gui/NeoBio.html
/usr/share/doc/neobio/html/neobio/gui/PairwiseAlignmentFrame.html
/usr/share/doc/neobio/html/neobio/gui/package-frame.html
/usr/share/doc/neobio/html/neobio/gui/package-summary.html
/usr/share/doc/neobio/html/neobio/gui/package-tree.html
/usr/share/doc/neobio/html/neobio/textui/NeoBio.html
/usr/share/doc/neobio/html/neobio/textui/RandomFactorSequenceGenerator.html
/usr/share/doc/neobio/html/neobio/textui/RandomSequenceGenerator.html
/usr/share/doc/neobio/html/neobio/textui/package-frame.html
/usr/share/doc/neobio/html/neobio/textui/package-summary.html
/usr/share/doc/neobio/html/neobio/textui/package-tree.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/AlignmentBlock.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/BasicScoringScheme.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/CharSequence.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/CrochemoreLandauZivUkelson.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/Factor.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/FactorSequence.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/IncompatibleScoringSchemeException.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/InvalidScoringMatrixException.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/InvalidSequenceException.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/LocalAlignmentBlock.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/Matrix.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/NeedlemanWunsch.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/OutMatrix.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/PairwiseAlignment.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/PairwiseAlignmentAlgorithm.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/ScoringMatrix.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/ScoringScheme.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/Smawk.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/SmithWaterman.html
/usr/share/doc/neobio/html/src-html/neobio/alignment/Trie.html
/usr/share/doc/neobio/html/src-html/neobio/gui/AboutDialog.html
/usr/share/doc/neobio/html/src-html/neobio/gui/NeoBio.html
/usr/share/doc/neobio/html/src-html/neobio/gui/PairwiseAlignmentFrame.html
/usr/share/doc/neobio/html/src-html/neobio/textui/NeoBio.html
/usr/share/doc/neobio/html/src-html/neobio/textui/RandomFactorSequenceGenerator.html
/usr/share/doc/neobio/html/src-html/neobio/textui/RandomSequenceGenerator.html
/usr/share/java/neobio-0.0.20030929.jar
/usr/share/java/neobio.jar
/usr/share/man/man1/neobio.1.gz

Changelog

2018-09-27 - Andreas Tille <tille@debian.org>
neobio (0.0.20030929-4) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Do not parse d/changelog
2017-09-11 - Andreas Tille <tille@debian.org>
neobio (0.0.20030929-3) unstable; urgency=medium
* Moved packaging from SVN to Git
* Fake watch file
* cme fix dpkg-control
* d/rules: -source 1.6 -target 1.6
Closes: #873994
* debhelper 10
2016-01-14 - Andreas Tille <tille@debian.org>
neobio (0.0.20030929-2) unstable; urgency=medium
* moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Priority: optional
* debhelper 9
* mention removed files in Files-Excluded
* Add fake watch file to document that there are no versioned downloads
* Remove menu file since there is a desktop file
* d/rules:
- Fix estimation of version number
- Fix sf privacy breach logo
2013-05-22 - gregor herrmann <gregoa@debian.org>
neobio (0.0.20030929-1.1) unstable; urgency=low
[ Andreas Tille ]
* Enhanced short description
[ gregor herrmann ]
* Non-maintainer upload.
* Fix "Transition package to default java implementation":
apply patch from Ubuntu / James Page:
* Transition package to default java implementation:
- d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
to default-jre | java6-runtime.
- d/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
(Closes: #684162)
2012-05-30 - Christoph Gille <christophgil@googlemail.com>
neobio (0.0.20030929-1) unstable; urgency=low
* Initial release (Closes: #647543)

See Also

Package Description
neofetch_6.0.0-2_all.deb Shows Linux System Information with Distribution Logo
neomutt_20180716+dfsg.1-1_amd64.deb command line mail reader based on Mutt, with added features
neopi_0.0+git20120821.9ffff8-6_all.deb web shell code detection
neovim-qt_0.2.12-1_amd64.deb neovim client library and GUI
neovim-runtime_0.3.4-1_all.deb heavily refactored vim fork (runtime files)
neovim_0.3.4-1_amd64.deb heavily refactored vim fork
nescc_1.3.5-1.1_amd64.deb Programming Language for Deeply Networked Systems
nestopia_1.49-2_amd64.deb Nintendo Entertainment System/Famicom emulator
net-acct_0.71-9build1_amd64.deb User-mode IP accounting daemon
netanim_3.100-1build1_amd64.deb network animator based on Qt4 working with ns-3
netatalk_3.1.12~ds-2_amd64.deb Apple Filing Protocol service
netbeans_10.0-3_all.deb Extensible Java IDE
netcat-traditional_1.10-41.1_amd64.deb TCP/IP swiss army knife
netcat_1.10-41.1_all.deb TCP/IP swiss army knife -- transitional package
netcdf-bin_4.6.2-1build1_amd64.deb Programs for reading and writing NetCDF files
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