ncbi-rrna-data_6.1.20170106-6_all.deb


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Description

ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename ncbi-rrna-data_6.1.20170106-6_all.deb
Package name ncbi-rrna-data
Package version 6.1.20170106
Package release 6
Package architecture all
Package type deb
Category universe/science
Homepage http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 44.17 MB
Installed size 343.30 MB
This package contains some ribosomal RNA BLAST databases distributed
as part of the NCBI C Toolkit that are too large and specialized to
include in ncbi-data.  Specifically, it contains the databases
Combined16SrRNA, LSURef_93.fasta, LSU_nomito_nochloro_noplastid,
SSURef_93.fasta, and SSU_nomito_nochloro_noplastid, along with alias
files to facilitate searching some of them in conjunction with
databases included in ncbi-data.

Alternatives

Package Version Architecture Repository
ncbi-rrna-data_6.1.20170106-6_all.deb 6.1.20170106 all Ubuntu Universe
ncbi-rrna-data - - -

Requires

Name Value
ncbi-data -

Replaces

Name Value
ncbi-data << 6.1.20160908

Download

Type URL
Mirror archive.ubuntu.com
Binary Package ncbi-rrna-data_6.1.20170106-6_all.deb
Source Package ncbi-tools6

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ncbi-rrna-data deb package:
    # sudo apt-get install ncbi-rrna-data

Files

Path
/usr/share/doc/ncbi-rrna-data/README.gz
/usr/share/doc/ncbi-rrna-data/changelog.Debian.gz
/usr/share/doc/ncbi-rrna-data/copyright
/usr/share/ncbi/data/Combined16SrRNA.nhr
/usr/share/ncbi/data/Combined16SrRNA.nin
/usr/share/ncbi/data/Combined16SrRNA.nsq
/usr/share/ncbi/data/LSURef_93.fasta.nhr
/usr/share/ncbi/data/LSURef_93.fasta.nin
/usr/share/ncbi/data/LSURef_93.fasta.nsq
/usr/share/ncbi/data/LSU_nomito-nochloro-noplastid.nhr
/usr/share/ncbi/data/LSU_nomito-nochloro-noplastid.nin
/usr/share/ncbi/data/LSU_nomito-nochloro-noplastid.nsq
/usr/share/ncbi/data/SSURef_93.fasta.nhr
/usr/share/ncbi/data/SSURef_93.fasta.nin
/usr/share/ncbi/data/SSURef_93.fasta.nsq
/usr/share/ncbi/data/SSU_nomito_nochloro_noplastid.nhr
/usr/share/ncbi/data/SSU_nomito_nochloro_noplastid.nin
/usr/share/ncbi/data/SSU_nomito_nochloro_noplastid.nsq
/usr/share/ncbi/data/rRNA_blast.nal
/usr/share/ncbi/data/rRNAstrand.nal

Changelog

2018-12-27 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20170106-6) unstable; urgency=medium
* debian/rules: Find indirectly needed libraries via -rpath-link rather
than LD_LIBRARY_PATH; the -rpath-link approach is generally saner, and
in particular has a decent shot at fully fixing cross-building.
2018-12-24 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20170106-5) unstable; urgency=medium
[ Andreas Tille ]
* Improve cross building: Don't force the build architecture compiler
(Thanks for the patch to Helmut Grohne)
Closes: #908353
* cme fix dpkg-control
[ Aaron M. Ucko ]
* debian/control: libvibrant6b Recommends: sensible-utils (no longer
guaranteed present, per #871260).
* Standards-Version: 4.3.0 (already compliant).
2018-06-25 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20170106-4) unstable; urgency=medium
* debian/compat: Advance to Debhelper 11.
* debian/control:
- Mark *-data reshuffling with Breaks, not just Replaces. (Closes: #902364.)
- Build-Depends: Advance to debhelper (>= 11~).
* debian/copyright: Fix years (packaging through 2018, upstream through 2017).
2018-06-24 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20170106-3) unstable; urgency=medium
[ Liubov Chuprikova ]
* Added autopkgtest for ncbi-tools-bin. 
Closes: #879619
[ Aaron M. Ucko ]
* debian/{*.gif,ncbi2.css}: Add local copies of NCBI resources used by HTML
docs.
* debian/control:
- Repoint Vcs-* at salsa.debian.org.
- Standards-Version: 4.1.4 (already compliant).
- Rules-Requires-Root: no (confirmed safe).
* debian/{libncbi6,ncbi-tools-x11}.docs: Install resources from debian/ as
needed.
* debian/source/format: Set to 3.0 (quilt) to accommodate binary test data.
* debian/source/include-binaries: List debian/tests/test-data/nc0305.aso.gz
and (individually) debian/*.gif.
* debian/source/options: single-debian-patch (tracking changes purely
with git for now).
* debian/source/patch-header: "Combined patches from git."
* demo/{findspl,taxblast_main}.c: Call SOCK_SetupSSL (accidentally missed
earlier).
* doc/{dispatcher,firewall}.html: Patch to use (newly supplied) local
resources, addressing a generic privacy breach caught by Lintian.
* make/make{demo,net}.unx: Link findspl and taxblast against $(LIBTLS)
and $(GNUTLS_LIBS).
2017-02-05 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20170106-2) unstable; urgency=medium
* debian/control: Correctly version ncbi-tools-bin's Breaks/Replaces
on blast2 over taxblast move.  (Closes: #854329.)
2017-01-09 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20170106-1) unstable; urgency=medium
* New upstream release (after all).
* debian/*.symbols: Update accordingly.
* doc/man/cleanasn.1: Update accordingly.
* debian/copyright: Update years.
2016-12-06 - Aaron M. Ucko <ucko@debian.org>
ncbi-tools6 (6.1.20160908-2) unstable; urgency=medium
* Stop building the transitional blast2 package (taken over by ncbi-blast+)
and retire its remaining vestiges (the bibliograpy and autopkgtest setup).
* connect/ncbi_util.c: Fix a FTBFS on hurd-i386 by conditionally using a
more appropriate header for PAGE_SIZE (<mach/vm_param.h>).
* Reinstate taxblast (now part of ncbi-tools-bin, and correctly documented
as a postprocessing tool), accidentally dropped with the rest of blast2.

See Also

Package Description
ncbi-seg_0.0.20000620-5_amd64.deb tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin_6.1.20170106-6_amd64.deb NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11_6.1.20170106-6_amd64.deb NCBI libraries for biology applications (X-based utilities)
ncc_2.8-2.1build1_amd64.deb C source code analyzer
ncdt_2.1-4_amd64.deb Display directory tree
ncdu_1.13-1_amd64.deb ncurses disk usage viewer
ncftp_3.2.5-2.1_amd64.deb User-friendly and well-featured FTP client
ncl-ncarg_6.5.0-2_amd64.deb NCAR Command Language and NCAR graphics
ncl-tools_2.1.21+git20180827.c71b264-2_amd64.deb tools to deal with NEXUS files
ncmpc-lyrics_0.33-2_all.deb ncurses-based audio player (lyrics plugins)
ncmpc_0.33-2_amd64.deb ncurses-based audio player
ncmpcpp_0.8.2-0.1build1_amd64.deb ncurses-based client for the Music Player Daemon (MPD)
nco_4.7.9-1_amd64.deb Command-line operators to analyze netCDF files
ncoils_2002-7_amd64.deb coiled coil secondary structure prediction
ncompress_4.2.4.5-3_amd64.deb original Lempel-Ziv compress/uncompress programs
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