murasaki-mpi_1.68.6-8_amd64.deb


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Description

murasaki-mpi - homology detection tool across multiple large genomes (MPI-version)

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename murasaki-mpi_1.68.6-8_amd64.deb
Package name murasaki-mpi
Package version 1.68.6
Package release 8
Package architecture amd64
Package type deb
Category universe/science
Homepage http://murasaki.dna.bio.keio.ac.jp/wiki/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 635.47 KB
Installed size 4.08 MB
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
This package provides the MPI-enabled binary for murasaki.  While this
will speed up operation on multi-processor machines it will slow down
on a single processor.

Alternatives

Package Version Architecture Repository
murasaki-mpi_1.68.6-8_i386.deb 1.68.6 i386 Ubuntu Universe
murasaki-mpi - - -

Requires

Name Value
libboost-filesystem1.67.0 -
libboost-iostreams1.67.0 -
libboost-regex1.67.0 -
libboost-system1.67.0 -
libc6 >= 2.14
libgcc1 >= 1:3.0
libopenmpi3 -
libstdc++6 >= 5.2
murasaki-common -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package murasaki-mpi_1.68.6-8_amd64.deb
Source Package murasaki

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install murasaki-mpi deb package:
    # sudo apt-get install murasaki-mpi

Files

Path
/usr/bin/geneparse-mpi
/usr/bin/mbfa-mpi
/usr/bin/murasaki-mpi
/usr/lib/murasaki/align-and-mpi
/usr/lib/murasaki/align-best-mpi
/usr/lib/murasaki/align-compare-mpi
/usr/lib/murasaki/align-coverage-mpi
/usr/lib/murasaki/align-or-mpi
/usr/lib/murasaki/cgr-compare-mpi
/usr/lib/murasaki/cgr-image-mpi
/usr/lib/murasaki/cgr-image.pl-mpi
/usr/lib/murasaki/cgr-random-mpi
/usr/lib/murasaki/cgr-sample-mpi
/usr/lib/murasaki/testeco-mpi
/usr/share/doc/murasaki-mpi/README.test
/usr/share/doc/murasaki-mpi/changelog.Debian.gz
/usr/share/doc/murasaki-mpi/copyright
/usr/share/man/man1/geneparse-mpi.1.gz
/usr/share/man/man1/mbfa-mpi.1.gz
/usr/share/man/man1/murasaki-mpi.1.gz

Changelog

2018-10-08 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-8) unstable; urgency=medium
* Standards-Version: 4.2.1
* Provide copies of manpages instead of broken symlinks
Closes: #910421
2018-07-14 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-7) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Fix remaining spelling issues
* d/rules: Do not parse d/changelog
2016-06-30 - Gert Wollny <gw.fossdev@gmail.com>
murasaki (1.68.6-6) unstable; urgency=medium
[ Gert Wollny ]
* Team upload
* d/p/gcc-6: Add patch to compile with gcc-6: Closes: #811815
* cme fix dpkg-control 
[ Andreas Tille ]
* hardening=+bindnow
2016-03-15 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-5) unstable; urgency=medium
* Upstream-Contact does not work any more
* Moved packaging from SVN to Git
* Turn README.Debian into README.test
2015-11-24 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-4) unstable; urgency=medium
* Make sure arch independent packages can be built separately
Closes: #806083
2015-07-03 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-3) unstable; urgency=medium
* Enable build on kfreebsd (Thanks for the patch to Aaron M. Ucko
<ucko@debian.org>)
Closes: #789971
2015-06-25 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-2) unstable; urgency=medium
* Do not try to access dirs from arch all package when doing arch any
only builds
Closes: #789827, #789880
* Small DEP5 format fix
2015-04-16 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-1) unstable; urgency=medium
* Initial release (Closes: #782697)
* Split up into murasaki and murasaki-mpi (+murasaki-common)
2015-04-15 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-0ubuntu1) trusty; urgency=medium
* Test upload to Debian Med PPA

See Also

Package Description
murasaki_1.68.6-8_amd64.deb homology detection tool across multiple large genomes
muroar-bin_0.1.13-4_amd64.deb minimalist RoarAudio client library (binary package)
muroard-dev_0.1.14-6_amd64.deb minimalist RoarAudio sound daemon (development files)
muroard_0.1.14-6_amd64.deb minimalist RoarAudio sound daemon
murrine-themes_0.98.11_all.deb themes for gtk2 murrine engine
muscle_3.8.1551-1_amd64.deb Multiple alignment program of protein sequences
muse-el_3.20+dfsg-4_all.deb Transition Package, muse-el to elpa-muse
muse_3.0.2+ds1-1_amd64.deb Qt-based audio/MIDI sequencer
musepack-tools_0.1~r495-1build1_amd64.deb MusePack commandline utilities
musescore-common_2.3.2+dfsg2-4_all.deb MuseScore (music composition and notation) shared files
musescore-general-soundfont-lossless_0.1.4-1_all.deb General SoundFont from MuseScore (uncompressed)
musescore-general-soundfont-small_0.1.4-1_all.deb General SoundFont from MuseScore (light version)
musescore-general-soundfont_0.1.4-1_all.deb General SoundFont from MuseScore (full version)
musescore_2.3.2+dfsg2-4_amd64.deb cross-platform multi-lingual music composition and notation
music-bin_1.0.7-4build1_amd64.deb Multi-Simulation Coordinator for MPI -- Utilities
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