murasaki-common_1.68.6-8_all.deb


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Description

murasaki-common - homology detection tool across multiple large genomes (common files)

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename murasaki-common_1.68.6-8_all.deb
Package name murasaki-common
Package version 1.68.6
Package release 8
Package architecture all
Package type deb
Category universe/science
Homepage http://murasaki.dna.bio.keio.ac.jp/wiki/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 140.94 KB
Installed size 429.00 KB
Murasaki is a scalable and fast, language theory-based homology
detection tool across multiple large genomes. It enable whole-genome
scale multiple genome global alignments. Supports unlimited length
gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with
40 nodes: 52 wall minutes))
* scalable (Arbitrarily parallelizable across multiple nodes using MPI.
Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
* unlimited pattern length
* repeat tolerant
* intelligent noise reduction
This package contains all files that are common to the single core murasaki
package and the multi core murasaki-mpi package.

Alternatives

Package Version Architecture Repository
murasaki-common_1.68.6-8_all.deb 1.68.6 all Ubuntu Universe
murasaki-common - - -

Requires

Name Value
gnuplot -
gnuplot5 -
imagemagick -
libbio-perl-perl -
r-cran-rocr -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package murasaki-common_1.68.6-8_all.deb
Source Package murasaki

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install murasaki-common deb package:
    # sudo apt-get install murasaki-common

Files

Path
/usr/lib/debian-med/bin/align2kog.pl
/usr/lib/debian-med/bin/analyze-pat.pl
/usr/lib/debian-med/bin/anchors2maf.pl
/usr/lib/debian-med/bin/anchors2osfinder.pl
/usr/lib/debian-med/bin/antisense.pl
/usr/lib/debian-med/bin/chromostitch.pl
/usr/lib/debian-med/bin/dna2binary.pl
/usr/lib/debian-med/bin/dnashuffle.pl
/usr/lib/debian-med/bin/faformat.pl
/usr/lib/debian-med/bin/filter.pl
/usr/lib/debian-med/bin/gatherstats.pl
/usr/lib/debian-med/bin/geneparse.pl
/usr/lib/debian-med/bin/getcds.pl
/usr/lib/debian-med/bin/getgene.pl
/usr/lib/debian-med/bin/histocomp.pl
/usr/lib/debian-med/bin/histoplot.pl
/usr/lib/debian-med/bin/homology-score.pl
/usr/lib/debian-med/bin/humantime.pl
/usr/lib/debian-med/bin/interpolate.pl
/usr/lib/debian-med/bin/kogalign.pl
/usr/lib/debian-med/bin/lav2murasaki.pl
/usr/lib/debian-med/bin/maf2anchors.pl
/usr/lib/debian-med/bin/mauve2anchors.pl
/usr/lib/debian-med/bin/mauveAlignment2anchors.pl
/usr/lib/debian-med/bin/mbgd-to-kog.pl
/usr/lib/debian-med/bin/mfasplit.pl
/usr/lib/debian-med/bin/names2kog.pl
/usr/lib/debian-med/bin/osfinder2anchors.pl
/usr/lib/debian-med/bin/overlay.pl
/usr/lib/debian-med/bin/phAlignment2anchors.pl
/usr/lib/debian-med/bin/qlob.pl
/usr/lib/debian-med/bin/randpat.pl
/usr/lib/debian-med/bin/rearrange.pl
/usr/lib/debian-med/bin/repeats2anchors.pl
/usr/lib/debian-med/bin/repeatviz.pl
/usr/lib/debian-med/bin/roc-at-cutoff.pl
/usr/lib/debian-med/bin/simpal.pl
/usr/lib/debian-med/bin/simplegraph.pl
/usr/lib/debian-med/bin/stat-histo.pl
/usr/lib/debian-med/bin/stat-vs-stat.pl
/usr/lib/debian-med/bin/substitch.pl
/usr/share/doc/murasaki-common/README.Debian
/usr/share/doc/murasaki-common/changelog.Debian.gz
/usr/share/doc/murasaki-common/copyright
/usr/share/man/man1/align2kog.pl.1.gz
/usr/share/man/man1/analyze-pat.pl.1.gz
/usr/share/man/man1/chromostitch.pl.1.gz
/usr/share/man/man1/faformat.pl.1.gz
/usr/share/man/man1/filter.pl.1.gz
/usr/share/man/man1/gatherstats.pl.1.gz
/usr/share/man/man1/getcds.pl.1.gz
/usr/share/man/man1/getgene.pl.1.gz
/usr/share/man/man1/histocomp.pl.1.gz
/usr/share/man/man1/histoplot.pl.1.gz
/usr/share/man/man1/homology-score.pl.1.gz
/usr/share/man/man1/interpolate.pl.1.gz
/usr/share/man/man1/kogalign.pl.1.gz
/usr/share/man/man1/lav2murasaki.pl.1.gz
/usr/share/man/man1/maf2anchors.pl.1.gz
/usr/share/man/man1/mauve2anchors.pl.1.gz
/usr/share/man/man1/mauveAlignment2anchors.pl.1.gz
/usr/share/man/man1/mbgd-to-kog.pl.1.gz
/usr/share/man/man1/mfasplit.pl.1.gz
/usr/share/man/man1/names2kog.pl.1.gz
/usr/share/man/man1/overlay.pl.1.gz
/usr/share/man/man1/phAlignment2anchors.pl.1.gz
/usr/share/man/man1/qlob.pl.1.gz
/usr/share/man/man1/rearrange.pl.1.gz
/usr/share/man/man1/repeats2anchors.pl.1.gz
/usr/share/man/man1/repeatviz.pl.1.gz
/usr/share/man/man1/roc-at-cutoff.pl.1.gz
/usr/share/man/man1/simpal.pl.1.gz
/usr/share/man/man1/simplegraph.pl.1.gz
/usr/share/man/man1/stat-histo.pl.1.gz
/usr/share/man/man1/stat-vs-stat.pl.1.gz
/usr/share/man/man1/substitch.pl.1.gz
/usr/share/perl5/murasaki/Murasaki.pm
/usr/share/perl5/murasaki/config.pl
/usr/share/perl5/murasaki/Murasaki/KOG.pm
/usr/share/perl5/murasaki/Murasaki/OrthoConsistency.pm
/usr/share/perl5/murasaki/Murasaki/OrthoList.pm
/usr/share/perl5/murasaki/Murasaki/OrthoPairs.pm
/usr/share/perl5/murasaki/Murasaki/SeqFeatures.pm
/usr/share/perl5/murasaki/Murasaki/Ticker.pm

Changelog

2018-10-08 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-8) unstable; urgency=medium
* Standards-Version: 4.2.1
* Provide copies of manpages instead of broken symlinks
Closes: #910421
2018-07-14 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-7) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Fix remaining spelling issues
* d/rules: Do not parse d/changelog
2016-06-30 - Gert Wollny <gw.fossdev@gmail.com>
murasaki (1.68.6-6) unstable; urgency=medium
[ Gert Wollny ]
* Team upload
* d/p/gcc-6: Add patch to compile with gcc-6: Closes: #811815
* cme fix dpkg-control 
[ Andreas Tille ]
* hardening=+bindnow
2016-03-15 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-5) unstable; urgency=medium
* Upstream-Contact does not work any more
* Moved packaging from SVN to Git
* Turn README.Debian into README.test
2015-11-24 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-4) unstable; urgency=medium
* Make sure arch independent packages can be built separately
Closes: #806083
2015-07-03 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-3) unstable; urgency=medium
* Enable build on kfreebsd (Thanks for the patch to Aaron M. Ucko
<ucko@debian.org>)
Closes: #789971
2015-06-25 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-2) unstable; urgency=medium
* Do not try to access dirs from arch all package when doing arch any
only builds
Closes: #789827, #789880
* Small DEP5 format fix
2015-04-16 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-1) unstable; urgency=medium
* Initial release (Closes: #782697)
* Split up into murasaki and murasaki-mpi (+murasaki-common)
2015-04-15 - Andreas Tille <tille@debian.org>
murasaki (1.68.6-0ubuntu1) trusty; urgency=medium
* Test upload to Debian Med PPA

See Also

Package Description
murasaki-mpi_1.68.6-8_amd64.deb homology detection tool across multiple large genomes (MPI-version)
murasaki_1.68.6-8_amd64.deb homology detection tool across multiple large genomes
muroar-bin_0.1.13-4_amd64.deb minimalist RoarAudio client library (binary package)
muroard-dev_0.1.14-6_amd64.deb minimalist RoarAudio sound daemon (development files)
muroard_0.1.14-6_amd64.deb minimalist RoarAudio sound daemon
murrine-themes_0.98.11_all.deb themes for gtk2 murrine engine
muscle_3.8.1551-1_amd64.deb Multiple alignment program of protein sequences
muse-el_3.20+dfsg-4_all.deb Transition Package, muse-el to elpa-muse
muse_3.0.2+ds1-1_amd64.deb Qt-based audio/MIDI sequencer
musepack-tools_0.1~r495-1build1_amd64.deb MusePack commandline utilities
musescore-common_2.3.2+dfsg2-4_all.deb MuseScore (music composition and notation) shared files
musescore-general-soundfont-lossless_0.1.4-1_all.deb General SoundFont from MuseScore (uncompressed)
musescore-general-soundfont-small_0.1.4-1_all.deb General SoundFont from MuseScore (light version)
musescore-general-soundfont_0.1.4-1_all.deb General SoundFont from MuseScore (full version)
musescore_2.3.2+dfsg2-4_amd64.deb cross-platform multi-lingual music composition and notation
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