msxpertsuite_5.8.6-2_amd64.deb


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Description

msxpertsuite - mass spectrometry software suite - metapackage

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename msxpertsuite_5.8.6-2_amd64.deb
Package name msxpertsuite
Package version 5.8.6
Package release 2
Package architecture amd64
Package type deb
Category universe/science
Homepage http://www.msxpertsuite.org/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 9.53 KB
Installed size 47.00 KB
msXpertSuite provides programs to model linear (bio-) polymer
chemistries, simulate mass spectral data, analyse and data-mine mass.
It is the successor of GNU polyXmass, first, and then of massXpert.
The massXpert and mineXpert programs allow the following:
massXpert:
- making brand new polymer chemistry definitions;
- using the definitions to perform easy calculations in a desktop
calculator-like manner;
- performing sophisticated polymer sequence editing and simulations;
- perform m/z list comparisons;
Chemical simulations encompass cleavage (either chemical or
enzymatic), gas-phase fragmentations, chemical modification of any
monomer in the polymer sequence, cross-linking of monomers in the
sequence, arbitrary mass searches, calculation of the isotopic
pattern...
mineXpert:
- Open mass spectrometry data files (mzML, mzXML, asc, xy, ...);
- Calculate and display the TIC chromatogram;
- For mobility data, calculate and display a mz=f(dt) color map;
- Integrate the data from the TIC chromatogram or color map
- to mass spectrum;
- to drift spectrum;
- back to TIC chromatogram (XIC chromatogram);
- reverse operations;
- to single TIC intensity value
(for mass spectral intensity comparisons);
- Model centroids peaks into mass spectra using either the
Gaussian model or the Lorentzian model;
- Export the data to text files;
- Slice a big initial file into smaller chunks for easier mining;
- Define how mining activity is recorded on disk for later use;
- Convert mzML files into a private (albeit open) mass spectrometry
format that allows better performance (based on SQLite3).
This package depends on both massXpert and mineXpert packages and thus will
install both of them. To install only one of the packages, install the
corresponding msxpertsuite-massxpert or msxpertsuite-minexpert package.

Alternatives

Package Version Architecture Repository
msxpertsuite_5.8.6-2_i386.deb 5.8.6 i386 Ubuntu Universe
msxpertsuite - - -

Requires

Name Value
msxpertsuite-massxpert >= 5.8.6
msxpertsuite-massxpert << 5.8.6A~
msxpertsuite-minexpert >= 5.8.6
msxpertsuite-minexpert << 5.8.6A~

Download

Type URL
Mirror archive.ubuntu.com
Binary Package msxpertsuite_5.8.6-2_amd64.deb
Source Package msxpertsuite

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install msxpertsuite deb package:
    # sudo apt-get install msxpertsuite

Files

Path
/usr/share/doc/msxpertsuite/changelog.Debian.gz
/usr/share/doc/msxpertsuite/copyright
/usr/share/man/man7/msxpertsuite.7.gz

Changelog

2019-03-06 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.6-2) unstable; urgency=low
* d/control: +Homepage: http://www.msxpertsuite.org/ (not https).
* Fix the license mismatch output by lintian (appstream.xml file vs
d/copyright).
2019-02-14 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.6-1) unstable; urgency=low
* Reinstate partially all the conflicts/breaks/replaces statements for the
mspxertsuite-massxpert binary package. This ensures that upgrade of
massxpert from stable's version to this version does not stumble upon
overwriting blocks. Thanks to Andreas Beckmann
<anbe@debian.org> for reporting the piuparts log (Closes: #922287).
* Took advantage to update the
minexpert/org.msxpertsuite.minexpert.appdata.xml file (which justifies new
upstream version.
2019-02-12 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.5-1) unstable; urgency=low
* appdata fixes to the gpl version number (lintian warning).
* d/rules: fix problem with the path to the .fop.xconf file not being found.
This is a missing fix with respect to the other d/rules files that was
working.
2019-02-11 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.4-1) unstable; urgency=low
* Make the user manuals and install them under the control of CMake.
* Convert d/rules to the debhelper mini format.
2019-02-08 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.3-1) unstable; urgency=low
* Make sure CMake is called during dpkg-buildpackage -A (Closes: #921727).
Thanks to Santiago Vila <sanvila@debian.org> for the report.
2019-02-06 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.2-1) unstable; urgency=low
* New version with the daps dependency for the user manuals build.
2019-02-04 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.1-1) UNRELEASED; urgency=low
* New upstream release with new configuration mode for the IsoSpec isotopic
cluster calculations.
2019-01-29 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.8.0-1) UNRELEASED; urgency=low
* New upstream version with implementation of a GUI for the IsoSpec library.
2019-01-16 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.7.3-1) unstable; urgency=low
* Fixes upstream.
2019-01-15 - Filippo Rusconi <lopippo@debian.org>
msxpertsuite (5.7.2-1) unstable; urgency=low
* Bug fixes in upstream massXpert.

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