mmass_5.5.0-5_all.deb


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Description

mmass - Mass spectrometry tool for proteomics

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename mmass_5.5.0-5_all.deb
Package name mmass
Package version 5.5.0
Package release 5
Package architecture all
Package type deb
Category universe/science
Homepage http://www.mmass.org/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 1.79 MB
Installed size 7.89 MB
mMass is a free mass spectrum viewer/analyzer in which the
following proteomics-related tasks can be performed:
- Open raw text, mzXML and mzData mass spectra;
- Define peak lists;
- Powerful mass spectrum viewer (zoom, cursor...);
- Data recalibration;
- Protein-only simulations;
- Online Mascot searches.
The software can be easily extended by additional Python modules.
This package contains the platform-independent parts of the software.

Alternatives

Package Version Architecture Repository
mmass_5.5.0-5_all.deb 5.5.0 all Ubuntu Universe
mmass - - -

Requires

Name Value
mmass-modules >= 5.5.0-5
python-numpy >= 1.4.1
python-wxgtk3.0 -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package mmass_5.5.0-5_all.deb
Source Package mmass

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mmass deb package:
    # sudo apt-get install mmass

Files

Path
/usr/bin/mmass
/usr/share/applications/mmass.desktop
/usr/share/doc/mmass/README.Debian
/usr/share/doc/mmass/changelog.Debian.gz
/usr/share/doc/mmass/copyright
/usr/share/doc/mmass/readme.txt
/usr/share/lintian/overrides/mmass
/usr/share/man/man1/mmass.1.gz
/usr/share/mmass/mmass.py
/usr/share/mmass/configs/compounds.xml
/usr/share/mmass/configs/config.xml
/usr/share/mmass/configs/enzymes.xml
/usr/share/mmass/configs/mascot.xml
/usr/share/mmass/configs/modifications.xml
/usr/share/mmass/configs/monomers.xml
/usr/share/mmass/configs/presets.xml
/usr/share/mmass/configs/references.xml
/usr/share/mmass/gui/__init__.py
/usr/share/mmass/gui/config.py
/usr/share/mmass/gui/dlg_clipboard_editor.py
/usr/share/mmass/gui/dlg_compounds_editor.py
/usr/share/mmass/gui/dlg_enzymes_editor.py
/usr/share/mmass/gui/dlg_error.py
/usr/share/mmass/gui/dlg_mascot_editor.py
/usr/share/mmass/gui/dlg_modifications_editor.py
/usr/share/mmass/gui/dlg_monomers_editor.py
/usr/share/mmass/gui/dlg_notation.py
/usr/share/mmass/gui/dlg_preferences.py
/usr/share/mmass/gui/dlg_presets_editor.py
/usr/share/mmass/gui/dlg_references_editor.py
/usr/share/mmass/gui/dlg_select_scans.py
/usr/share/mmass/gui/dlg_select_sequences.py
/usr/share/mmass/gui/doc.py
/usr/share/mmass/gui/ids.py
/usr/share/mmass/gui/images.py
/usr/share/mmass/gui/images_lib_gtk.py
/usr/share/mmass/gui/images_lib_mac.py
/usr/share/mmass/gui/images_lib_msw.py
/usr/share/mmass/gui/libs.py
/usr/share/mmass/gui/main_frame.py
/usr/share/mmass/gui/mwx.py
/usr/share/mmass/gui/panel_about.py
/usr/share/mmass/gui/panel_calibration.py
/usr/share/mmass/gui/panel_compare_peaklists.py
/usr/share/mmass/gui/panel_compounds_search.py
/usr/share/mmass/gui/panel_document_export.py
/usr/share/mmass/gui/panel_document_info.py
/usr/share/mmass/gui/panel_documents.py
/usr/share/mmass/gui/panel_envelope_fit.py
/usr/share/mmass/gui/panel_mascot.py
/usr/share/mmass/gui/panel_mass_calculator.py
/usr/share/mmass/gui/panel_mass_defect_plot.py
/usr/share/mmass/gui/panel_mass_filter.py
/usr/share/mmass/gui/panel_mass_to_formula.py
/usr/share/mmass/gui/panel_match.py
/usr/share/mmass/gui/panel_monomer_library.py
/usr/share/mmass/gui/panel_peak_differences.py
/usr/share/mmass/gui/panel_peaklist.py
/usr/share/mmass/gui/panel_periodic_table.py
/usr/share/mmass/gui/panel_processing.py
/usr/share/mmass/gui/panel_profound.py
/usr/share/mmass/gui/panel_prospector.py
/usr/share/mmass/gui/panel_sequence.py
/usr/share/mmass/gui/panel_spectrum.py
/usr/share/mmass/gui/panel_spectrum_generator.py
/usr/share/mmass/gui/images/gtk/arrows.png
/usr/share/mmass/gui/images/gtk/bgr_bottombar.png
/usr/share/mmass/gui/images/gtk/bgr_controlbar.png
/usr/share/mmass/gui/images/gtk/bgr_controlbar_border.png
/usr/share/mmass/gui/images/gtk/bgr_controlbar_double.png
/usr/share/mmass/gui/images/gtk/bgr_peakeditor.png
/usr/share/mmass/gui/images/gtk/bgr_toolbar.png
/usr/share/mmass/gui/images/gtk/bgr_toolbar_noborder.png
/usr/share/mmass/gui/images/gtk/bottombars_off.png
/usr/share/mmass/gui/images/gtk/bottombars_on.png
/usr/share/mmass/gui/images/gtk/bullets_off.png
/usr/share/mmass/gui/images/gtk/bullets_on.png
/usr/share/mmass/gui/images/gtk/cursors.png
/usr/share/mmass/gui/images/gtk/icon.icns
/usr/share/mmass/gui/images/gtk/icon.ico
/usr/share/mmass/gui/images/gtk/icon_128.png
/usr/share/mmass/gui/images/gtk/icon_16.png
/usr/share/mmass/gui/images/gtk/icon_256.png
/usr/share/mmass/gui/images/gtk/icon_32.png
/usr/share/mmass/gui/images/gtk/icon_48.png
/usr/share/mmass/gui/images/gtk/icon_512.png
/usr/share/mmass/gui/images/gtk/icon_about.png
/usr/share/mmass/gui/images/gtk/icon_dlg.png
/usr/share/mmass/gui/images/gtk/icon_error.png
/usr/share/mmass/gui/images/gtk/periodic_table_off.png
/usr/share/mmass/gui/images/gtk/periodic_table_on.png
/usr/share/mmass/gui/images/gtk/periodic_table_sel.png
/usr/share/mmass/gui/images/gtk/stopper.png
/usr/share/mmass/gui/images/gtk/toolbars_off.png
/usr/share/mmass/gui/images/gtk/toolbars_on.png
/usr/share/mmass/gui/images/gtk/tools.png
/usr/share/mmass/mspy/__init__.py
/usr/share/mmass/mspy/blocks.py
/usr/share/mmass/mspy/mod_basics.py
/usr/share/mmass/mspy/mod_calibration.py
/usr/share/mmass/mspy/mod_envfit.py
/usr/share/mmass/mspy/mod_formulator.py
/usr/share/mmass/mspy/mod_mascot.py
/usr/share/mmass/mspy/mod_pattern.py
/usr/share/mmass/mspy/mod_peakpicking.py
/usr/share/mmass/mspy/mod_proteo.py
/usr/share/mmass/mspy/mod_signal.py
/usr/share/mmass/mspy/mod_stopper.py
/usr/share/mmass/mspy/mod_utils.py
/usr/share/mmass/mspy/obj_compound.py
/usr/share/mmass/mspy/obj_peak.py
/usr/share/mmass/mspy/obj_peaklist.py
/usr/share/mmass/mspy/obj_scan.py
/usr/share/mmass/mspy/obj_sequence.py
/usr/share/mmass/mspy/parser_fasta.py
/usr/share/mmass/mspy/parser_mgf.py
/usr/share/mmass/mspy/parser_mzdata.py
/usr/share/mmass/mspy/parser_mzml.py
/usr/share/mmass/mspy/parser_mzxml.py
/usr/share/mmass/mspy/parser_xy.py
/usr/share/mmass/mspy/plot.py
/usr/share/mmass/mspy/plot_canvas.py
/usr/share/mmass/mspy/plot_objects.py
/usr/share/mmass/mspy/setup.py
/usr/share/pixmaps/mmass.xpm

Changelog

2016-06-20 - Filippo Rusconi <lopippo@debian.org>
mmass (5.5.0-5) unstable; urgency=medium
* Apply patch by Santiago Vila <sanvila@unex.es> (Closes:
#806078):  FTBFS: when built with dpkg-buildpackage -A 
(No such file or directory) .
* Standards-Version: 3.9.8, no changes required.
* https:// secure protocol for VCS browser.
2014-09-07 - Filippo Rusconi <lopippo@debian.org>
mmass (5.5.0-4) unstable; urgency=medium
* Update for wxwidgets3.0 (Closes: #758949). Thanks to Olly Betts
<olly@survex.com> for providing the patch. 
2014-08-18 - Filippo Rusconi <lopippo@debian.org>
mmass (5.5.0-3) unstable; urgency=medium
* mv upstream upstream/metadata;
* Bump-up to Standards-Version: 3.9.5.
2013-07-17 - Filippo Rusconi <lopippo@debian.org>
mmass (5.5.0-2) unstable; urgency=low
* debian/watch: fix syntax error. Thanks to Daniel Leidert
<daniel.leidert@wgdd.de> for reporting the bug (Closes: #675840) and
to Sebastian Gibb <mail@sebastiangibb.de> for pinging me about it.
2013-07-03 - Filippo Rusconi <lopippo@debian.org>
mmass (5.5.0-1) unstable; urgency=low
* New upstream release;
* debian/mmass.desktop: add Keywords field;
* debian/control: canonicalized the Vcs* fields;
2013-01-17 - Filippo Rusconi <lopippo@debian.org>
mmass (5.4.1-1) unstable; urgency=low
* New upstream release.
2012-11-18 - Filippo Rusconi <lopippo@debian.org>
mmass (5.4.0-1) unstable; urgency=low
* New upstream release.
2012-09-13 - Filippo Rusconi <lopippo@debian.org>
mmass (5.3.0-1) unstable; urgency=low
* New upstream release.
* Fix problem with absent build dependency [dpkg-dev (>= 1.16.1~)].
2012-07-23 - Filippo Rusconi <lopippo@debian.org>
mmass (5.2.0-2) unstable; urgency=low
* Fix bug in the debian/start-script that did not pass the command line
arguments to the mmass.py program.
2012-07-02 - Filippo Rusconi <lopippo@debian.org>
mmass (5.2.0-1) unstable; urgency=low
* New upstream release.

See Also

Package Description
mmc-utils_0+git20180327.b4fe0c8c-1_amd64.deb Userspace tools for MMC/SD devices
mmdb-bin_1.3.2-1_amd64.deb IP geolocation lookup command-line tool
mmdebstrap_0.4.1-2_all.deb create a Debian chroot
mmh_0.4-2_amd64.deb set of electronic mail handling programs
mmllib-tools_0.3.0.post1-1_all.deb library for handling Music Macro Language (tools)
mmm-mode_0.5.7-3_all.deb Multiple Major Mode for Emacs
mmorph_2.3.4.2-15_amd64.deb two-level morphology tool for natural language processing
mmsd_0.1-0ubuntu1_amd64.deb MMS daemon
mmv_1.01b-19build1_amd64.deb Move/Copy/Append/Link multiple files
mnemosyne_2.6.1+ds-1_all.deb spaced repetition flash-card program
moap_0.2.7-2_all.deb Swiss army knife for project maintainers and developers
moarvm-dev_2018.12+dfsg-3_amd64.deb development files for moarvm
moarvm_2018.12+dfsg-3_amd64.deb virtual machine for Rakudo Perl 6 and NQP
mobile-atlas-creator_2.1.0-1_all.deb program to create offline atlases for GPS/cell phone applications
moblin-cursor-theme_0.3-3_all.deb moblin cursor theme
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