mlv-smile_1.47-6_amd64.deb


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Description

mlv-smile - Find statistically significant patterns in sequences

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename mlv-smile_1.47-6_amd64.deb
Package name mlv-smile
Package version 1.47
Package release 6
Package architecture amd64
Package type deb
Category universe/science
Homepage http://www-igm.univ-mlv.fr/~marsan/smile_english.html
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 182.77 KB
Installed size 474.00 KB
Smile determines sequence motifs on the basis of a set of DNA, RNA or
protein sequences.
* No hard limit on the number of combinations of motifs to describe
subsets of sequences.
* The sequence alphabet may be specified.
* The use of wildcards is supported.
* Better determination of significance of motifs by simulation.
* Introduction of a set of sequences with negative controls
that should not match automatically determined motifs.

Alternatives

Package Version Architecture Repository
mlv-smile_1.47-6_i386.deb 1.47 i386 Ubuntu Universe
mlv-smile - - -

Requires

Name Value
libc6 >= 2.14
perl:any -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package mlv-smile_1.47-6_amd64.deb
Source Package mlv-smile

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mlv-smile deb package:
    # sudo apt-get install mlv-smile

Files

Path
/usr/bin/mlv-smile
/usr/lib/mlv-smile/bin/e-smile_against
/usr/lib/mlv-smile/bin/e-smile_shuffling
/usr/lib/mlv-smile/bin/x-smile
/usr/lib/mlv-smile/bin/x-smile_delta
/usr/share/doc/mlv-smile/1box_deg.gz
/usr/share/doc/mlv-smile/NEW
/usr/share/doc/mlv-smile/README.Debian
/usr/share/doc/mlv-smile/READ_ME.gz
/usr/share/doc/mlv-smile/alphabet
/usr/share/doc/mlv-smile/alphabet_deg
/usr/share/doc/mlv-smile/changelog.Debian.gz
/usr/share/doc/mlv-smile/copyright
/usr/share/doc/mlv-smile/example.gz
/usr/share/doc/mlv-smile/example.shuffle.gz
/usr/share/doc/mlv-smile/example2.shuffle.gz
/usr/share/doc/mlv-smile/fasta.gz
/usr/share/doc/mlv-smile/fastawrong
/usr/share/doc/mlv-smile/param_1box
/usr/share/doc/mlv-smile/param_against
/usr/share/doc/mlv-smile/param_delta
/usr/share/doc/mlv-smile/param_example
/usr/share/doc/mlv-smile/DocFrancais/LISEZ_MOI.gz
/usr/share/doc/mlv-smile/DocFrancais/NOUVEAU
/usr/share/doc/mlv-smile/DocFrancais/param_1bloc
/usr/share/doc/mlv-smile/DocFrancais/param_contre
/usr/share/doc/mlv-smile/DocFrancais/param_delta
/usr/share/doc/mlv-smile/DocFrancais/param_exemple
/usr/share/man/man1/mlv-smile.1.gz

Changelog

2018-10-23 - Andreas Tille <tille@debian.org>
mlv-smile (1.47-6) unstable; urgency=medium
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
* hardening=+all
2017-11-15 - Andreas Tille <tille@debian.org>
mlv-smile (1.47-5) unstable; urgency=medium
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
2015-12-16 - Andreas Tille <tille@debian.org>
mlv-smile (1.47-4) unstable; urgency=medium
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Fix clean target
* Fix issues reported by Mayhem
Closes: #715851, #716479, #716480
2012-05-03 - Andreas Tille <tille@debian.org>
mlv-smile (1.47-3) unstable; urgency=low
* debian/upstream: Added publication data
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs-Browser
- Moved directory in SVN from smile to mlv-smile
- Removed citation information from long description
- Spacing changes in long description
* debian/copyright: Fixed some DEP5 issues using
cme fix dpkg-copyright
* debhelper 9 (control+compat) to enable hardening
* debian/rules: Work around several broken Makefiles that would
need fixing by simply redefining CC to enable propagation of
hardening flags
2011-12-03 - Thorsten Alteholz <debian@alteholz.de>
mlv-smile (1.47-2) unstable; urgency=low
* Spellchecked manual pages (Closes: #650475, thanks to A. Costa).
2011-05-18 - Thorsten Alteholz <debian@alteholz.de>
mlv-smile (1.47-1) unstable; urgency=low
* initial Release (Closes: #221492).
* renamed package to mlv-smile 
* Lintian clean
* already prepared patches from Steffen Moeller applied
* debian/source/format added
* debian/compat changed to 8
* debian/copyright: new address of FSF, added version to licenses
* debian/rules: errors in manpage corrected
* debian/rules: simplified
* added DEP-3 header to patches
[Charles Plessy]
* debian/control: Added Vcs fields
* debian/control: Removed the [Biology] tag in the package short description
* debian/copyright: Converted the copyright file to DEP-5 format
[Steffen Moeller]
* New upstream release.
* GPL license stated in upstream release.
2003-11-18 - Steffen Moeller <moeller@pzr.uni-rostock.de>
mlv-smile (1.46-1) UNRELEASED; urgency=low
* Upstream author contributed man page.

See Also

Package Description
mm-common_0.9.12-1_all.deb Common build files of the GNOME C++ bindings
mm3d_1.3.11-1_amd64.deb OpenGL based 3D model editor
mma_16.06-2_all.deb Musical MIDI Accompaniment Generator
mmake_2.3-7_all.deb Makefile generator for Java programs
mmark_1.3.6+dfsg-1_amd64.deb Markdown processor in Go geared for the IETF (executable)
mmass-modules_5.5.0-5_amd64.deb Mass spectrometry tool for proteomics - extension modules
mmass_5.5.0-5_all.deb Mass spectrometry tool for proteomics
mmc-utils_0+git20180327.b4fe0c8c-1_amd64.deb Userspace tools for MMC/SD devices
mmdb-bin_1.3.2-1_amd64.deb IP geolocation lookup command-line tool
mmdebstrap_0.4.1-2_all.deb create a Debian chroot
mmh_0.4-2_amd64.deb set of electronic mail handling programs
mmllib-tools_0.3.0.post1-1_all.deb library for handling Music Macro Language (tools)
mmm-mode_0.5.7-3_all.deb Multiple Major Mode for Emacs
mmorph_2.3.4.2-15_amd64.deb two-level morphology tool for natural language processing
mmsd_0.1-0ubuntu1_amd64.deb MMS daemon
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