mira-assembler - Whole Genome Shotgun and EST Sequence Assembler

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename mira-assembler_4.9.6-4_amd64.deb
Package name mira-assembler
Package version 4.9.6
Package release 4
Package architecture amd64
Package type deb
Category universe/science
Homepage http://chevreux.org/projects_mira.html
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 2.18 MB
Installed size 6.94 MB
The mira genome fragment assembler is a specialised assembler for
sequencing projects classified as 'hard' due to high number of similar
repeats. For expressed sequence tags (ESTs) transcripts, miraEST is
specialised on reconstructing pristine mRNA transcripts while
detecting and classifying single nucleotide polymorphisms (SNP)
occurring in different variations thereof.
The assembler is routinely used for such various tasks as mutation
detection in different cell types, similarity analysis of transcripts
between organisms, and pristine assembly of sequences from various
sources for oligo design in clinical microarray experiments.
The package provides the following executables:
Binaries provided:
* mira: for assembly of genome sequences
* miramem: estimating memory needed to assemble projects.
* mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
* miraconvert: is a tool to convert, extract and sometimes recalculate all
kinds of data related to sequence assembly files.


Package Version Architecture Repository
mira-assembler_4.9.6-4_i386.deb 4.9.6 i386 Ubuntu Universe
mira-assembler - - -


Name Value
libboost-filesystem1.67.0 -
libboost-regex1.67.0 -
libboost-system1.67.0 -
libboost-thread1.67.0 -
libc6 >= 2.27
libexpat1 >= 2.0.1
libgcc1 >= 1:3.0
libgomp1 >= 4.9
libstdc++6 >= 5.2
zlib1g >= 1:1.2.6


Type URL
Mirror archive.ubuntu.com
Binary Package mira-assembler_4.9.6-4_amd64.deb
Source Package mira

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mira-assembler deb package:
    # sudo apt-get install mira-assembler




2018-09-19 - Andreas Tille <tille@debian.org>
mira (4.9.6-4) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added references to
OMICtools and bio.tools
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* No extra manpages from Debian
2017-06-12 - Nadiya Sitdykova <rovenskasa@gmail.com>
mira (4.9.6-3) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite for denovo, mapping and est assembly
2016-12-03 - Andreas Tille <tille@debian.org>
mira (4.9.6-2) unstable; urgency=medium
* debhelper 10
* d/watch: version=4
* Build-Depends: libfl-dev
Closes: #846442
* Remove unused lintian override
2016-05-04 - Michael R. Crusoe <michael.crusoe@gmail.com>
mira (4.9.6-1) unstable; urgency=medium
* New upstream release.
* dropped all patches except for one spelling fix, as they were incorporated
* dropped the -examples package for now, as the minidemo is missing from
upstream in this release.
* our manpages have been adopted and adapted upstream, so they have been
* added architecture independent package for rfam 12s rRNA database
* enable building docs & rfam packages separately
* Standards-Version bump to 3.9.8
* Updated package descriptions to remove tools that upstream no longer
* minidemo is missing from 4.9.6, commented out -examples package for now
* cleaned out unnecessary stanzas from debian/rules
2016-04-25 - Andreas Tille <tille@debian.org>
mira (4.9.5-6) unstable; urgency=medium
* Fix build issue with gcc-6
Closes: #822474
2016-02-03 - Michael R. Crusoe <crusoe@ucdavis.edu>
mira (4.9.5-5) unstable; urgency=medium
* Make build reproducible; fix FTBFS on non-'C' locales
2016-02-02 - Michael R. Crusoe <crusoe@ucdavis.edu>
mira (4.9.5-4) unstable; urgency=medium
* Packaging moved from SVN to Git
* Loosen boost dependencies.
2016-01-27 - Andreas Tille <tille@debian.org>
mira (4.9.5-3) unstable; urgency=medium
* Remove *.cc files that are created by old flex version which breaks
build otherwise
Closes: #812681
2015-12-04 - Andreas Tille <tille@debian.org>
mira (4.9.5-2) unstable; urgency=medium
* Verify that package builds without problems with gcc-5
Closes: #793261
* override false lintian positives
* Fix spelling
* wrote missing manpage and moved manpages to separate dir
2015-07-01 - Andreas Tille <tille@debian.org>
mira (4.9.5-1) unstable; urgency=medium
* New upstream version
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control

See Also

Package Description
mira-doc_4.9.6-4_all.deb documentation for the mira assembler
mira-rfam-12s-rrna_4.9.6-4_all.deb extract of RFAM 12 rRNA database
mirage_0.9.5.2-1_amd64.deb fast and simple GTK+ image viewer
miredo-server_1.2.6-7_amd64.deb Teredo IPv6 tunneling server
miredo_1.2.6-7_amd64.deb Teredo IPv6 tunneling through NATs
miri-sdr_0.0.4.59ba37-5_amd64.deb Software defined radio support for Mirics hardware (tools)
mirmon_2.11-5_all.deb monitor the state of mirrors
mirrorkit_0.2.1_all.deb Python frontend to debmirror
mirrormagic-data_3.0.0+dfsg2-1_all.deb Data files for mirrormagic
mirrormagic_3.0.0+dfsg2-1_amd64.deb Shoot around obstacles to collect energy using your beam
misery_0.2-1.1build2_amd64.deb Simple accounting package for groups, clubs, holidays
missfits_2.8.0-2_amd64.deb Basic maintenance and packaging tasks on FITS files
missidentify_1.0-9_amd64.deb find win32 applications
mistral-api_8.0.0-0ubuntu1_all.deb OpenStack Workflow service - API
mistral-common_8.0.0-0ubuntu1_all.deb OpenStack Workflow service - common files