minimap2_2.15+dfsg-1_amd64.deb


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Description

minimap2 - versatile pairwise aligner for genomic and spliced nucleotide sequences

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename minimap2_2.15+dfsg-1_amd64.deb
Package name minimap2
Package version 2.15+dfsg
Package release 1
Package architecture amd64
Package type deb
Category universe/science
Homepage https://github.com/lh3/minimap2
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 361.97 KB
Installed size 494.00 KB
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
genome alignment between two closely related species with divergence
below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.

Alternatives

Package Version Architecture Repository
minimap2_2.15+dfsg-1_i386.deb 2.15+dfsg i386 Ubuntu Universe
minimap2 - - -

Requires

Name Value
libc6 >= 2.27
zlib1g >= 1:1.1.4

Download

Type URL
Mirror archive.ubuntu.com
Binary Package minimap2_2.15+dfsg-1_amd64.deb
Source Package minimap2

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install minimap2 deb package:
    # sudo apt-get install minimap2

Files

Path
/usr/bin/minimap2
/usr/share/doc-base/minimap2
/usr/share/doc/minimap2/changelog.Debian.gz
/usr/share/doc/minimap2/copyright
/usr/share/doc/minimap2/minimap2.pdf
/usr/share/doc/minimap2/run-unit-test
/usr/share/doc/minimap2/test_script
/usr/share/doc/minimap2/test/MT-human.fa.gz
/usr/share/doc/minimap2/test/MT-orang.fa.gz
/usr/share/doc/minimap2/test/q-inv.fa.gz
/usr/share/doc/minimap2/test/q2.fa
/usr/share/doc/minimap2/test/t-inv.fa.gz
/usr/share/doc/minimap2/test/t2.fa
/usr/share/man/man1/minimap2.1.gz

Changelog

2019-01-11 - Andreas Tille <tille@debian.org>
minimap2 (2.15+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
2018-11-09 - Andreas Tille <tille@debian.org>
minimap2 (2.14+dfsg-1) unstable; urgency=low
* Initial packaging (Closes: #906332)

See Also

Package Description
minimap_0.2-4_amd64.deb tool for approximate mapping of long biosequences such as DNA reads
minimodem_0.24-1_amd64.deb general-purpose software audio FSK modem
mininet_2.2.2-4_amd64.deb process-based network emulator
minisapserver_0.3.6-1.1build1_amd64.deb Mini SAP Server
minisat+_1.0-4_amd64.deb solver for pseudo-Boolean constraints
minisat2_2.2.1-5build1_amd64.deb Transitional package for minisat
minisat_2.2.1-5build1_amd64.deb Fast and lightweight SAT solver
minissdpd_1.5.20190210-1_amd64.deb keep memory of all UPnP devices that announced themselves
ministat_20150715-1build1_amd64.deb simple tool for statistical comparison of data sets
minitube_2.9-1_amd64.deb Native YouTube client
miniupnpc_2.1-1build1_amd64.deb UPnP IGD client lightweight library client
miniupnpd_2.1-5_amd64.deb UPnP and NAT-PMP daemon for gateway routers
minizinc-ide_2.1.7-1_amd64.deb MiniZinc constraint modelling language IDE
minizinc_2.1.7+dfsg1-1_amd64.deb constraint modelling language and tool chain
minizip_1.1-8build1_amd64.deb compression library - minizip tools
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