minimac4_1.0.0-2_amd64.deb


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Description

minimac4 - Fast Imputation Based on State Space Reduction HMM

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename minimac4_1.0.0-2_amd64.deb
Package name minimac4
Package version 1.0.0
Package release 2
Package architecture amd64
Package type deb
Category universe/science
Homepage https://genome.sph.umich.edu/wiki/Minimac4
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 1.70 MB
Installed size 2.11 MB
Minimac4 is a lower memory and more computationally efficient implementation
of "minimac2/3". It is an algorithm for genotypic imputation that works on
phased genotypes (say from MaCH).
Minimac4 is designed to handle very large reference panels in a more
computationally efficient way with no loss of accuracy. This algorithm
analyzes only the unique sets of haplotypes in small genomic segments, thereby
saving on time\-complexity, computational memory but no loss in degree of
accuracy.

Alternatives

Package Version Architecture Repository
minimac4 - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libgomp1 >= 4.9
libstatgen0 >= 1.0.14
libstdc++6 >= 5.2
zlib1g >= 1:1.1.4

Download

Type URL
Mirror archive.ubuntu.com
Binary Package minimac4_1.0.0-2_amd64.deb
Source Package minimac4

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install minimac4 deb package:
    # sudo apt-get install minimac4

Files

Path
/usr/bin/minimac4
/usr/share/doc/minimac4/changelog.Debian.gz
/usr/share/doc/minimac4/copyright
/usr/share/doc/minimac4/examples/README
/usr/share/doc/minimac4/examples/expected.testRun.dose.vcf.gz
/usr/share/doc/minimac4/examples/expected.testRun.info.gz
/usr/share/doc/minimac4/examples/refPanel.m3vcf.gz
/usr/share/doc/minimac4/examples/refPanel.vcf.gz
/usr/share/doc/minimac4/examples/refPanelChrX.Non.Auto.vcf.gz
/usr/share/doc/minimac4/examples/run-sample-analysis
/usr/share/doc/minimac4/examples/sample.txt.filepart.gz
/usr/share/doc/minimac4/examples/targetStudy.vcf.gz
/usr/share/doc/minimac4/examples/targetStudyChrX.females.vcf
/usr/share/doc/minimac4/examples/targetStudyChrX.males.vcf
/usr/share/man/man1/minimac4.1.gz

Changelog

2018-09-28 - Dylan Aïssi <bob.dybian@gmail.com>
minimac4 (1.0.0-2) unstable; urgency=medium
* Fix autopkgtest.
* Add a patch to improve reproducible builds.
* Standards-Version: 4.2.1 (no changes needed).
2018-06-05 - Dylan Aïssi <bob.dybian@gmail.com>
minimac4 (1.0.0-1) unstable; urgency=low
* Initial release. (Closes: #900764)

See Also

Package Description
minimap2_2.15+dfsg-1_amd64.deb versatile pairwise aligner for genomic and spliced nucleotide sequences
minimap_0.2-4_amd64.deb tool for approximate mapping of long biosequences such as DNA reads
minimodem_0.24-1_amd64.deb general-purpose software audio FSK modem
mininet_2.2.2-4_amd64.deb process-based network emulator
minisapserver_0.3.6-1.1build1_amd64.deb Mini SAP Server
minisat+_1.0-4_amd64.deb solver for pseudo-Boolean constraints
minisat2_2.2.1-5build1_amd64.deb Transitional package for minisat
minisat_2.2.1-5build1_amd64.deb Fast and lightweight SAT solver
minissdpd_1.5.20190210-1_amd64.deb keep memory of all UPnP devices that announced themselves
ministat_20150715-1build1_amd64.deb simple tool for statistical comparison of data sets
minitube_2.9-1_amd64.deb Native YouTube client
miniupnpc_2.1-1build1_amd64.deb UPnP IGD client lightweight library client
miniupnpd_2.1-5_amd64.deb UPnP and NAT-PMP daemon for gateway routers
minizinc-ide_2.1.7-1_amd64.deb MiniZinc constraint modelling language IDE
minizinc_2.1.7+dfsg1-1_amd64.deb constraint modelling language and tool chain
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