khmer-common_2.1.2+dfsg-6_all.deb


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Description

khmer-common - common files for the khmer project tools

Property Value
Distribution Ubuntu 19.04 (Disco Dingo)
Repository Ubuntu Universe amd64
Package filename khmer-common_2.1.2+dfsg-6_all.deb
Package name khmer-common
Package version 2.1.2+dfsg
Package release 6
Package architecture all
Package type deb
Category universe/science
Homepage http://khmer.readthedocs.org
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 181.29 KB
Installed size 1.46 MB
khmer is a library and suite of command line tools for working with DNA
sequence. It is primarily aimed at short-read sequencing data such as
that produced by the Illumina platform. khmer takes a k-mer-centric
approach to sequence analysis, hence the name.
This package contains common files for liboxli and khmer

Alternatives

Package Version Architecture Repository
khmer-common_2.1.2+dfsg-6_all.deb 2.1.2+dfsg all Ubuntu Universe
khmer-common - - -

Requires

Name Value
file -
libjs-sphinxdoc >= 1.0
python3-guzzle-sphinx-theme -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package khmer-common_2.1.2+dfsg-6_all.deb
Source Package khmer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install khmer-common deb package:
    # sudo apt-get install khmer-common

Files

Path
/usr/share/doc-base/khmer
/usr/share/doc/khmer-common/CITATION.gz
/usr/share/doc/khmer-common/README.rst
/usr/share/doc/khmer-common/README.test
/usr/share/doc/khmer-common/changelog.Debian.gz
/usr/share/doc/khmer-common/copyright
/usr/share/doc/khmer-common/run-unit-test
/usr/share/doc/khmer-common/test-compile.cc
/usr/share/doc/khmer-common/html/LICENSE.html
/usr/share/doc/khmer-common/html/citations.html
/usr/share/doc/khmer-common/html/contributors.html
/usr/share/doc/khmer-common/html/genindex.html
/usr/share/doc/khmer-common/html/index.html
/usr/share/doc/khmer-common/html/introduction.html
/usr/share/doc/khmer-common/html/objects.inv
/usr/share/doc/khmer-common/html/roadmap.html
/usr/share/doc/khmer-common/html/search.html
/usr/share/doc/khmer-common/html/searchindex.js
/usr/share/doc/khmer-common/html/_images/artifact-removal.png
/usr/share/doc/khmer-common/html/_images/partitioning-workflow.png
/usr/share/doc/khmer-common/html/_sources/LICENSE.rst.txt
/usr/share/doc/khmer-common/html/_sources/citations.rst.txt.gz
/usr/share/doc/khmer-common/html/_sources/contributors.rst.txt
/usr/share/doc/khmer-common/html/_sources/index.rst.txt
/usr/share/doc/khmer-common/html/_sources/introduction.rst.txt
/usr/share/doc/khmer-common/html/_sources/roadmap.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/CODE_OF_CONDUCT.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/a-quick-guide-to-testing.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/binary-file-formats.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/codebase-guide.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/development.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/for-khmer-developers.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/getting-started.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/guidelines-continued-dev.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/hackathon.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/index.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/python-api.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/release.rst.txt
/usr/share/doc/khmer-common/html/_sources/dev/scripts-and-sandbox.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/index.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-1.0.1.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-1.0.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-1.1.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-1.2.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-1.3.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-1.4.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-2.0.rst.txt
/usr/share/doc/khmer-common/html/_sources/release-notes/release-2.1.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/api-examples.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/biblio.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/blog-posts.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/choosing-table-sizes.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/examples.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/galaxy.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/getting-help.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/guide.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/index.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/install.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/known-issues.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/partitioning-big-data.rst.txt
/usr/share/doc/khmer-common/html/_sources/user/scripts.rst.txt
/usr/share/doc/khmer-common/html/_static/ajax-loader.gif
/usr/share/doc/khmer-common/html/_static/basic.css
/usr/share/doc/khmer-common/html/_static/comment-bright.png
/usr/share/doc/khmer-common/html/_static/comment-close.png
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/usr/share/doc/khmer-common/html/_static/jquery.js
/usr/share/doc/khmer-common/html/_static/jquery.min.js
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/usr/share/doc/khmer-common/html/_static/css/bootstrap-theme.min.css
/usr/share/doc/khmer-common/html/_static/css/bootstrap.min.css
/usr/share/doc/khmer-common/html/_static/css/font-face.css
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/usr/share/doc/khmer-common/html/_static/js/bootstrap.js
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/usr/share/doc/khmer-common/html/dev/CODE_OF_CONDUCT.html
/usr/share/doc/khmer-common/html/dev/a-quick-guide-to-testing.html
/usr/share/doc/khmer-common/html/dev/binary-file-formats.html
/usr/share/doc/khmer-common/html/dev/codebase-guide.html
/usr/share/doc/khmer-common/html/dev/development.html
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/usr/share/doc/khmer-common/html/release-notes/release-1.1.html
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/usr/share/doc/khmer-common/html/release-notes/release-2.1.html
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/usr/share/doc/khmer-common/html/user/choosing-table-sizes.html
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/usr/share/doc/khmer-common/html/user/galaxy.html
/usr/share/doc/khmer-common/html/user/getting-help.html
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/usr/share/doc/khmer-common/html/user/index.html
/usr/share/doc/khmer-common/html/user/install.html
/usr/share/doc/khmer-common/html/user/known-issues.html
/usr/share/doc/khmer-common/html/user/partitioning-big-data.html
/usr/share/doc/khmer-common/html/user/scripts.html
/usr/share/file/khmer/magic

Changelog

2019-01-09 - Michael R. Crusoe <michael.crusoe@gmail.com>
khmer (2.1.2+dfsg-6) unstable; urgency=medium
* Fix building arch-independent packages separately.
2019-01-08 - Michael R. Crusoe <michael.crusoe@gmail.com>
khmer (2.1.2+dfsg-5) unstable; urgency=medium
* Fix liboxli-dev autopkgtest.
* debian/khmer.metainfo.xml: Use a component ID in reverse domain-name
format.
* shrink khmer-common and silence many lintian warnings by symlinking to the
relevant files in python3-guzzle-sphinx-theme
2019-01-07 - Andreas Tille <tille@debian.org>
khmer (2.1.2+dfsg-4) unstable; urgency=medium
* Team upload.
[ Michael R. Crusoe ]
* deal with embedded-javascript-library.
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.3.0
* Drop useless get-orig-source target
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Drop ancient X-Python-Version field
* package khmer is: Multi-Arch: foreign
2018-02-11 - Michael R. Crusoe <michael.crusoe@gmail.com>
khmer (2.1.2+dfsg-3) unstable; urgency=medium
* Drop unsupported archs (mips*, ppc*).
2017-12-15 - Andreas Tille <tille@debian.org>
khmer (2.1.2+dfsg-2) unstable; urgency=medium
* Team upload
* debhelper 10
* Specify compression option from d/rules directly inside watch file
* Fix clean target ba removing possibly existing __pycache__ and .eggs
* Autopkgtest is making use of third-party header file - install this into
liboxli-dev package and add according -I directive to test
Closes: #851830
* Standards-Version: 4.1.2
2017-10-07 - Michael R. Crusoe <michael.crusoe@gmail.com>
khmer (2.1.2+dfsg-1) unstable; urgency=medium
* New upstream version 2.1.2
2017-08-29 - Michael R. Crusoe <michael.crusoe@gmail.com>
khmer (2.1.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* Remove empty field
[ Michael R. Crusoe ]
* New upstream version 2.1.1
* Incorporate patch from Ubuntu, thank you Michael Hudson-Doyle.
Closes: #862380
2017-05-12 - Michael Hudson-Doyle <michael.hudson@ubuntu.com>
khmer (2.0+dfsg-10ubuntu1) artful; urgency=medium
* Fix build with Python 3.6.
2017-04-06 - Mattia Rizzolo <mattia@debian.org>
khmer (2.0+dfsg-10) unstable; urgency=medium
* Team upload.
* Revert "Drop arm64 due to failing tests."  Closes: #859752
2017-01-24 - Michael R. Crusoe <michael.crusoe@gmail.com>
khmer (2.0+dfsg-9) unstable; urgency=medium
* Drop arm64 due to failing tests. (Closes: #851830)

See Also

Package Description
khmer_2.1.2+dfsg-6_amd64.deb in-memory DNA sequence kmer counting, filtering & graph traversal
khmerconverter_1.4-1.2_all.deb converts between legacy Khmer encodings and Unicode
khotkeys-data_5.15.4-0ubuntu1_all.deb configure input actions settings
khotkeys-dev_5.15.4-0ubuntu1_amd64.deb configure input actions settings
khotkeys_5.15.4-0ubuntu1_amd64.deb configure input actions settings
khronos-api_4.6+git20180514-1_all.deb Khronos XML API Registry
kicad-common_5.0.2+dfsg1-1_all.deb Old common files used by kicad - Transitional Package
kicad-demos_5.0.2+dfsg1-1_all.deb Demo projects for kicad
kicad-doc-ca_5.0.2+dfsg1-1_all.deb Kicad help files (Catalan)
kicad-doc-de_5.0.2+dfsg1-1_all.deb Kicad help files (German)
kicad-doc-en_5.0.2+dfsg1-1_all.deb Kicad help files (English)
kicad-doc-es_5.0.2+dfsg1-1_all.deb Kicad help files (Spanish)
kicad-doc-fr_5.0.2+dfsg1-1_all.deb Kicad help files (French)
kicad-doc-id_5.0.2+dfsg1-1_all.deb Kicad help files (Indonesian)
kicad-doc-it_5.0.2+dfsg1-1_all.deb Kicad help files (Italian)
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