python-pbsuite-utils_15.8.24+dfsg-2_all.deb


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Description

python-pbsuite-utils - software for Pacific Biosciences sequencing data -- Python utilities

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename python-pbsuite-utils_15.8.24+dfsg-2_all.deb
Package name python-pbsuite-utils
Package version 15.8.24+dfsg
Package release 2
Package architecture all
Package type deb
Category universe/python
Homepage http://sourceforge.net/projects/pb-jelly
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 493.64 KB
Installed size 6.40 MB
The PBSuite currently contains two projects created and maintained
by Adam English for analysis of Pacific Biosciences long-read
sequencing data.
* PBJelly - genome upgrading tool
* PBHoney - structural variation discovery
This package contains Python 2 utilities for the suite.

Alternatives

Package Version Architecture Repository
python-pbsuite-utils_15.8.24+dfsg-2_all.deb 15.8.24+dfsg all Ubuntu Universe
python-pbsuite-utils - - -

Requires

Name Value
python-pysam >= 0.8.0
python:any >= 2.7.5-5~
python:any << 2.8

Download

Type URL
Mirror archive.ubuntu.com
Binary Package python-pbsuite-utils_15.8.24+dfsg-2_all.deb
Source Package pbsuite

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pbsuite-utils deb package:
    # sudo apt-get install python-pbsuite-utils

Files

Path
/usr/lib/python2.7/dist-packages/pbsuite/__init__.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/BamStat.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/BedIO.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/CommandRunner.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/FileHandlers.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/VCFIO.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/__init__.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/bamToFastq.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/blasrToBed.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/fakeQuals.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/fastqDivide.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/fastqSplit.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/jellyoutputrename.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/longCCSCombine.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/mapStats.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/mergeFaQu.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/quickN50.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/readSummary.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/setupLogging.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/summarizeAssembly.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplate.vcf
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/SVTemplate.vcf
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/eeasmIns_actual.e12048212
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/eeasmIns_actual.o12048212
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/output
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/phased.snps.vcf
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/spotToVCF.py
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/spots.vcf
/usr/lib/python2.7/dist-packages/pbsuite/utils/vcfTemplates/test.vcf
/usr/share/doc/python-pbsuite-utils/changelog.Debian.gz
/usr/share/doc/python-pbsuite-utils/copyright

Changelog

2016-12-28 - Afif Elghraoui <afif@debian.org>
pbsuite (15.8.24+dfsg-2) unstable; urgency=medium
* Update pbsuite for compatibility with blasr 5 (Closes: #844034)
* Bump Standards-Version to 3.9.8
* Add dependency on intervaltree-bio to restore PBHoney's ComplexResolver
* debian/rules: don't use buildsystem=pybuild
2016-02-27 - Afif Elghraoui <afif@debian.org>
pbsuite (15.8.24+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #807802)

See Also

Package Description
python-pcapy_0.10.8-1build1_i386.deb Python interface to the libpcap packet capture library
python-pcl-msgs_0.2.0-6_all.deb Python code for PCL-related Robot OS Messages
python-pcp_4.0.1-1_i386.deb Performance Co-Pilot Python PMAPI module
python-pcs_0.6+debian-0ubuntu3_i386.deb Packet Construction Set for Python
python-pdal_1.6.0+ds-1_i386.deb Point Data Abstraction Library - Python 2 extension
python-pdfkit_0.5.0-1_all.deb Python wrapper for wkhtmltopdf to convert HTML to PDF (Python 2)
python-pdfminer_20140328+dfsg-1_all.deb PDF parser and analyser
python-pdfrw-doc_0.4-1_all.deb PDF file manipulation library (documentation)
python-pdfrw_0.4-1_all.deb PDF file manipulation library (Python 2)
python-pdftools_0.37-4_all.deb PDF document reading classes
python-peak.rules_0.5a1+r2713-1_all.deb generic functions support for Python
python-peak.util.decorators_1.8-4_all.deb version-agnostic decorators support for Python
python-peak.util_20160204-1_all.deb utilities from the Python Enterprise Application Kit
python-pebl-doc_1.0.2-4_all.deb Python Environment for Bayesian Learning - documentation
python-pebl_1.0.2-4_i386.deb Python Environment for Bayesian Learning
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