python-csb_1.2.5+dfsg-3_all.deb


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Description

python-csb - Python framework for structural bioinformatics

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename python-csb_1.2.5+dfsg-3_all.deb
Package name python-csb
Package version 1.2.5+dfsg
Package release 3
Package architecture all
Package type deb
Category universe/python
Homepage https://github.com/csb-toolbox/CSB
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 2.07 MB
Installed size 8.16 MB
Computational Structural Biology Toolbox (CSB) is a Python class
library for reading, storing and analyzing biomolecular structures
in a variety of formats with rich support for statistical analyses.
CSB is designed for reusability and extensibility and comes with a clean,
well-documented API following good object-oriented engineering practice.

Alternatives

Package Version Architecture Repository
python-csb_1.2.5+dfsg-3_all.deb 1.2.5+dfsg all Ubuntu Universe
python-csb - - -

Requires

Name Value
python-matplotlib -
python-numpy -
python-scipy -
python:any >= 2.7.5-5~
python:any << 2.8

Download

Type URL
Mirror archive.ubuntu.com
Binary Package python-csb_1.2.5+dfsg-3_all.deb
Source Package python-csb

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-csb deb package:
    # sudo apt-get install python-csb

Files

Path
/usr/lib/python2.7/dist-packages/csb/__init__.py
/usr/lib/python2.7/dist-packages/csb/build.py
/usr/lib/python2.7/dist-packages/csb-1.2.5.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/csb-1.2.5.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/csb-1.2.5.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/csb-1.2.5.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/csb-1.2.5.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/csb/apps/__init__.py
/usr/lib/python2.7/dist-packages/csb/apps/bfit.py
/usr/lib/python2.7/dist-packages/csb/apps/bfite.py
/usr/lib/python2.7/dist-packages/csb/apps/buildhmm.py
/usr/lib/python2.7/dist-packages/csb/apps/csfrag.py
/usr/lib/python2.7/dist-packages/csb/apps/embd.py
/usr/lib/python2.7/dist-packages/csb/apps/helloworld.py
/usr/lib/python2.7/dist-packages/csb/apps/hhfrag.py
/usr/lib/python2.7/dist-packages/csb/apps/hhsearch.py
/usr/lib/python2.7/dist-packages/csb/apps/precision.py
/usr/lib/python2.7/dist-packages/csb/apps/promix.py
/usr/lib/python2.7/dist-packages/csb/bio/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/fragments/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/fragments/rosetta.py
/usr/lib/python2.7/dist-packages/csb/bio/hmm/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/hmm/pseudocounts.py
/usr/lib/python2.7/dist-packages/csb/bio/io/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/io/clans.py
/usr/lib/python2.7/dist-packages/csb/bio/io/cs.py
/usr/lib/python2.7/dist-packages/csb/bio/io/dssp.py
/usr/lib/python2.7/dist-packages/csb/bio/io/fasta.py
/usr/lib/python2.7/dist-packages/csb/bio/io/hhpred.py
/usr/lib/python2.7/dist-packages/csb/bio/io/mrc.py
/usr/lib/python2.7/dist-packages/csb/bio/io/noe.py
/usr/lib/python2.7/dist-packages/csb/bio/io/procheck.py
/usr/lib/python2.7/dist-packages/csb/bio/io/psipred.py
/usr/lib/python2.7/dist-packages/csb/bio/io/svg.py
/usr/lib/python2.7/dist-packages/csb/bio/io/vasco.py
/usr/lib/python2.7/dist-packages/csb/bio/io/whatif.py
/usr/lib/python2.7/dist-packages/csb/bio/io/wwpdb.py
/usr/lib/python2.7/dist-packages/csb/bio/nmr/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources/AtomConnectivity.xml
/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources/RandomCoil.Corrections.tsv
/usr/lib/python2.7/dist-packages/csb/bio/nmr/resources/RandomCoil.Reference.tsv
/usr/lib/python2.7/dist-packages/csb/bio/sequence/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/sequence/alignment.py
/usr/lib/python2.7/dist-packages/csb/bio/structure/__init__.py
/usr/lib/python2.7/dist-packages/csb/bio/utils/__init__.py
/usr/lib/python2.7/dist-packages/csb/core/__init__.py
/usr/lib/python2.7/dist-packages/csb/io/__init__.py
/usr/lib/python2.7/dist-packages/csb/io/plots.py
/usr/lib/python2.7/dist-packages/csb/io/tsv.py
/usr/lib/python2.7/dist-packages/csb/numeric/__init__.py
/usr/lib/python2.7/dist-packages/csb/numeric/integrators.py
/usr/lib/python2.7/dist-packages/csb/statistics/__init__.py
/usr/lib/python2.7/dist-packages/csb/statistics/ars.py
/usr/lib/python2.7/dist-packages/csb/statistics/maxent.py
/usr/lib/python2.7/dist-packages/csb/statistics/mixtures.py
/usr/lib/python2.7/dist-packages/csb/statistics/rand.py
/usr/lib/python2.7/dist-packages/csb/statistics/scalemixture.py
/usr/lib/python2.7/dist-packages/csb/statistics/pdf/__init__.py
/usr/lib/python2.7/dist-packages/csb/statistics/pdf/parameterized.py
/usr/lib/python2.7/dist-packages/csb/statistics/samplers/__init__.py
/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/__init__.py
/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/multichain.py
/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py
/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/propagators.py
/usr/lib/python2.7/dist-packages/csb/statistics/samplers/mc/singlechain.py
/usr/lib/python2.7/dist-packages/csb/statmech/__init__.py
/usr/lib/python2.7/dist-packages/csb/statmech/ensembles.py
/usr/lib/python2.7/dist-packages/csb/statmech/wham.py
/usr/lib/python2.7/dist-packages/csb/test/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/app.py
/usr/lib/python2.7/dist-packages/csb/test/cases/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/fragments/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/hmm/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/clans/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/cs/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/fasta/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/mrc/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/noe/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/procheck/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/whatif/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/nmr/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/structure/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/bio/utils/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/core/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/io/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/numeric/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/numeric/integrators.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/ars.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/maxent.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/mixtures.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/rand.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/scalemixture.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/pdf/parameterized.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statistics/samplers/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statmech/__init__.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statmech/ensembles.py
/usr/lib/python2.7/dist-packages/csb/test/cases/statmech/wham.py
/usr/lib/python2.7/dist-packages/csb/test/data/1C3W_10.mrc
/usr/lib/python2.7/dist-packages/csb/test/data/1d3z.legacy.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/1d3z.regular.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/1nz9.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/1nz9A.frags
/usr/lib/python2.7/dist-packages/csb/test/data/2JZC.sum
/usr/lib/python2.7/dist-packages/csb/test/data/2l01.v2.str
/usr/lib/python2.7/dist-packages/csb/test/data/2l01.v3.str
/usr/lib/python2.7/dist-packages/csb/test/data/3p1u.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/3shm_ca.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/ISL5.1.isl
/usr/lib/python2.7/dist-packages/csb/test/data/Sparky.peaks
/usr/lib/python2.7/dist-packages/csb/test/data/Xeasy1.peaks
/usr/lib/python2.7/dist-packages/csb/test/data/Xeasy2.peaks
/usr/lib/python2.7/dist-packages/csb/test/data/ake-xray-ensemble-ca.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/csb.tsv
/usr/lib/python2.7/dist-packages/csb/test/data/d1b24a2.hhm
/usr/lib/python2.7/dist-packages/csb/test/data/d1ea0a1.hhr
/usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.a3m
/usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.hhm
/usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.mfasta
/usr/lib/python2.7/dist-packages/csb/test/data/d1nz0a_.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/mapping.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/mapping2.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/mapping3.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/modified.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/modified2.pdb
/usr/lib/python2.7/dist-packages/csb/test/data/out.clans
/usr/lib/python2.7/dist-packages/csb/test/data/pdbout.txt
/usr/lib/python2.7/dist-packages/csb/test/data/standard.tsv
/usr/lib/python2.7/dist-packages/csb/test/data/struct.ali.mfasta
/usr/lib/python2.7/dist-packages/csb/test/data/test.fa
/usr/lib/python2.7/dist-packages/csb/test/data/test.hhm
/usr/lib/python2.7/dist-packages/csb/test/data/test2.hhm
/usr/share/doc/python-csb/changelog.Debian.gz
/usr/share/doc/python-csb/copyright

Changelog

2018-04-16 - Andreas Tille <tille@debian.org>
python-csb (1.2.5+dfsg-3) unstable; urgency=medium
* Standards-Version: 4.1.4
* Rename d/tests/control to d/tests/control.autodep8
* Testsuite: autopkgtest-pkg-python
2018-04-05 - Andreas Tille <tille@debian.org>
python-csb (1.2.5+dfsg-2) unstable; urgency=medium
* Add dh-python to Build-Depends since this will be dropped from python3's
Depends soon
* Standards-Version: 4.1.3
* Point Vcs fields to salsa.debian.org
* debhelper 11
2017-11-13 - Andreas Tille <tille@debian.org>
python-csb (1.2.5+dfsg-1) unstable; urgency=medium
* New upstream version
* Project moved to Github
* debhelper 10
* Standards-Version: 4.1.1
* Fix reading UTF-8 encoded files
* Build-Depends: python-setuptools
* Add csb binary package with user executable tools
* Add manpages for csb tools
2016-06-05 - Sascha Steinbiss <sascha@steinbiss.name>
python-csb (1.2.3+dfsg-3) unstable; urgency=medium
* Team upload.
* Make build reproducible.
- Address build time variation and sorting issues.
* Bump Standards-Version.
* Use secure Vcs-*.
2015-12-28 - Andreas Tille <tille@debian.org>
python-csb (1.2.3+dfsg-2) unstable; urgency=medium
* Fix d/watch
* Fix clean target
* use pybuild
* Add missing Build-Depends for Python3
* Verified tests and excluded online tests (even if these do not cause
failures)
Closes: #738962
2014-10-02 - Andreas Tille <tille@debian.org>
python-csb (1.2.3+dfsg-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
2014-02-03 - Tomas Di Domenico <tdido@tdido.com.ar>
python-csb (1.2.2+dfsg-2) unstable; urgency=medium
* debian/tests/build: add build dir to PYTHONPATH to fix auto_test
permission problems
Closes: #735883
2013-12-29 - Tomas Di Domenico <tdido@tdido.com.ar>
python-csb (1.2.2+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* debian/watch: Enable detecting also *.zip source archives
* debian/rules:
- delete useless .PHONY lines
* debian/copyright: Add Upstream-Contact and more authors addresses
[ Tomas Di Domenico ]
* debian/rules: add build dir to PYTHONPATH to fix auto_test
Closes: #732945
2013-12-22 - Andreas Tille <tille@debian.org>
python-csb (1.2.1+dfsg-2) unstable; urgency=medium
* debian/control
- cme fix dpkg-control
- debhelper 9
* debian/tests/control: Add python-numpy
Closes: #711376
2013-10-09 - Tomas Di Domenico <tdido@tdido.com.ar>
python-csb (1.2.1+dfsg-1) unstable; urgency=low
* Updated to the latest upstream release

See Also

Package Description
python-csound_6.10.0~dfsg-1_i386.deb Python bindings for Csound
python-csoundac_6.10.0~dfsg-1_i386.deb Python bindings for CsoundAC
python-cssmin_0.2.0-6_all.deb YUI CSS compression algorithm (Python 2 version)
python-cssselect_1.0.3-1_all.deb cssselect parses CSS3 Selectors and translates them to XPath 1.0
python-cssutils_1.0.2-1_all.deb CSS Cascading Style Sheets parser and builder
python-cups_1.9.73-2_i386.deb Python bindings for CUPS
python-curtin_18.1-5-g572ae5d6-0ubuntu1_all.deb Library and tools for curtin installer
python-curtsies_0.2.12-1_all.deb library for terminal interaction (Python 2)
python-custodia_0.5.0-3_all.deb Python bindings to Custodia -- Modular and pluggable Secrets Manager
python-cutadapt_1.15-1_i386.deb Clean biological sequences from high-throughput sequencing reads (Python 2)
python-cv-bridge_1.12.3+ds-2_i386.deb cv_bridge ROS package - Python bindings
python-cvxopt-doc_1.1.9+dfsg-2build1_all.deb Python package for convex optimization (documentation)
python-cvxopt_1.1.9+dfsg-2build1_i386.deb Python package for convex optimization
python-cwiid_0.6.00+svn201-4_i386.deb library to interface with the wiimote
python-cxx-dev_7.0.3-1ubuntu1_all.deb Set of facilities to extend Python with C++
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