python-cobra_0.5.9-1build2_i386.deb


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Description

python-cobra - constraint-based modeling of biological networks (Python 2)

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename python-cobra_0.5.9-1build2_i386.deb
Package name python-cobra
Package version 0.5.9
Package release 1build2
Package architecture i386
Package type deb
Category universe/python
Homepage http://opencobra.github.io/cobrapy/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 160.25 KB
Installed size 776.00 KB
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
This package provides the Python 2 module.

Alternatives

Package Version Architecture Repository
python-cobra_0.5.9-1build2_amd64.deb 0.5.9 amd64 Ubuntu Universe
python-cobra - - -

Requires

Name Value
libc6 >= 2.4
libglpk40 >= 4.59
python << 2.8
python >= 2.7~
python-cobra-data = 0.5.9-1build2
python-six -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Mirror archive.ubuntu.com
Binary Package python-cobra_0.5.9-1build2_i386.deb
Source Package python-cobra

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-cobra deb package:
    # sudo apt-get install python-cobra

Files

Path
/usr/lib/python2.7/dist-packages/cobra/VERSION
/usr/lib/python2.7/dist-packages/cobra/__init__.py
/usr/lib/python2.7/dist-packages/cobra/version.py
/usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/cobra-0.5.9.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/cobra/core/ArrayBasedModel.py
/usr/lib/python2.7/dist-packages/cobra/core/DictList.py
/usr/lib/python2.7/dist-packages/cobra/core/Formula.py
/usr/lib/python2.7/dist-packages/cobra/core/Gene.py
/usr/lib/python2.7/dist-packages/cobra/core/Metabolite.py
/usr/lib/python2.7/dist-packages/cobra/core/Model.py
/usr/lib/python2.7/dist-packages/cobra/core/Object.py
/usr/lib/python2.7/dist-packages/cobra/core/Reaction.py
/usr/lib/python2.7/dist-packages/cobra/core/Solution.py
/usr/lib/python2.7/dist-packages/cobra/core/Species.py
/usr/lib/python2.7/dist-packages/cobra/core/__init__.py
/usr/lib/python2.7/dist-packages/cobra/design/__init__.py
/usr/lib/python2.7/dist-packages/cobra/design/design_algorithms.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/__init__.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/deletion_worker.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/double_deletion.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/essentiality.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/gapfilling.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/loopless.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/moma.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/parsimonious.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/reaction.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/single_deletion.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/summary.py
/usr/lib/python2.7/dist-packages/cobra/flux_analysis/variability.py
/usr/lib/python2.7/dist-packages/cobra/io/__init__.py
/usr/lib/python2.7/dist-packages/cobra/io/json.py
/usr/lib/python2.7/dist-packages/cobra/io/mat.py
/usr/lib/python2.7/dist-packages/cobra/io/sbml.py
/usr/lib/python2.7/dist-packages/cobra/io/sbml3.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/__init__.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/annotate.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/delete.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/modify.py
/usr/lib/python2.7/dist-packages/cobra/manipulation/validate.py
/usr/lib/python2.7/dist-packages/cobra/solvers/__init__.py
/usr/lib/python2.7/dist-packages/cobra/solvers/cglpk.i386-linux-gnu.so
/usr/lib/python2.7/dist-packages/cobra/solvers/coin.py
/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/cplex_solver_java.py
/usr/lib/python2.7/dist-packages/cobra/solvers/esolver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/glpk_solver_java.py
/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver.py
/usr/lib/python2.7/dist-packages/cobra/solvers/gurobi_solver_java.py
/usr/lib/python2.7/dist-packages/cobra/solvers/mosek.py
/usr/lib/python2.7/dist-packages/cobra/solvers/parameters.py
/usr/lib/python2.7/dist-packages/cobra/solvers/wrappers.py
/usr/lib/python2.7/dist-packages/cobra/test/__init__.py
/usr/lib/python2.7/dist-packages/cobra/test/conftest.py
/usr/lib/python2.7/dist-packages/cobra/test/data
/usr/lib/python2.7/dist-packages/cobra/test/test_design.py
/usr/lib/python2.7/dist-packages/cobra/test/test_dictlist.py
/usr/lib/python2.7/dist-packages/cobra/test/test_flux_analysis.py
/usr/lib/python2.7/dist-packages/cobra/test/test_io.py
/usr/lib/python2.7/dist-packages/cobra/test/test_manipulation.py
/usr/lib/python2.7/dist-packages/cobra/test/test_model.py
/usr/lib/python2.7/dist-packages/cobra/test/test_solvers.py
/usr/lib/python2.7/dist-packages/cobra/topology/__init__.py
/usr/lib/python2.7/dist-packages/cobra/topology/reporter_metabolites.py
/usr/share/doc/python-cobra/README.rst.gz
/usr/share/doc/python-cobra/changelog.Debian.gz
/usr/share/doc/python-cobra/copyright

Changelog

2017-08-05 - Matthias Klose <doko@ubuntu.com>
python-cobra (0.5.9-1build2) artful; urgency=medium
* No-change rebuild to build to drop python3.5.
2017-06-08 - Michael Hudson-Doyle <michael.hudson@ubuntu.com>
python-cobra (0.5.9-1build1) artful; urgency=medium
* No change rebuild to add Python 3.6 support.
2017-01-25 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.9-1) unstable; urgency=medium
* New upstream release
* Refresh patch
2016-11-29 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.6-1) unstable; urgency=medium
* Imported Upstream version 0.5.6
* Update packaging to accommodate change in test suite framework
- include a workaround for #846045 (in pytest-benchmark) to be able
to run tests without pytest-benchmark available.
* d/tests/Makefile: update test script to accommodate return code change
2016-11-07 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.4-1) unstable; urgency=medium
* Imported Upstream version 0.5.4
* Update upstream contact
2016-10-21 - Afif Elghraoui <afif@debian.org>
python-cobra (0.5.2-1) unstable; urgency=medium
* Drop patch applied upstream
* Imported Upstream version 0.5.2
* Update docs installation
* Remove unused lintian overrides
2016-07-17 - Afif Elghraoui <afif@debian.org>
python-cobra (0.4.2~b1-1) unstable; urgency=medium
* Imported Upstream version 0.4.2~b1
* Refresh patches
* Use Make to drive autopkgtests and document some rationale
* Clean up d/control and d/rules
* Include jsonschema and pandas to run additional CI tests
2016-06-01 - Sascha Steinbiss <sascha@steinbiss.name>
python-cobra (0.4.1-2) unstable; urgency=medium
* Team upload.
* Make build reproducible.
- Ensure stable ordering for required dependencies.
* Bump Standards-Version.
2016-03-24 - Afif Elghraoui <afif@debian.org>
python-cobra (0.4.1-1) unstable; urgency=medium
* Imported Upstream version 0.4.1
* Refreshed patch
2016-03-08 - Afif Elghraoui <afif@ghraoui.name>
python-cobra (0.4.0+0-1) unstable; urgency=medium
* Imported Upstream version 0.4.0
* Add uversionmangle to d/watch
* Use encrypted protocols for VCS URLs

See Also

Package Description
python-codegen_1.0-1_all.deb extension to ast that allows AST -> Python code generation
python-codicefiscale_0.9+ds0-1_all.deb Generate and validate Italian "codice fiscale" (Python 2.x)
python-cogent-doc_1.9-11build1_all.deb docs for python-cogent
python-cogent_1.9-11build1_i386.deb framework for genomic biology
python-collada_0.4-2_all.deb Python module for creating, editing and loading COLLADA
python-coloredlogs_7.3-1_all.deb colored terminal output for Python 2's logging module
python-colorlog_3.1.2-1_all.deb formatter to use with the logging module of Python 2
python-colormap_1.0.1-1_all.deb ease manipulation of matplotlib colormaps and color codecs (Python 2)
python-colorspacious_1.1.0-1_all.deb library for doing colorspace conversions - Python 2.X
python-colour_0.1.5-1_all.deb converts and manipulates various color representation - Python 2.X
python-comedilib_0.10.2-4build7_i386.deb Python wrapper for Comedilib
python-commando_1.0.0-0.2_all.deb wrapper for argparse to define declaratively (Python 2)
python-commonmark-bkrs-doc_0.5.4+ds-1_all.deb Python parser for the CommonMark Markdown spec -- doc
python-commonmark-bkrs_0.5.4+ds-1_all.deb Python parser for the CommonMark Markdown spec -- Python
python-compizconfig_0.9.13.1+18.04.20180302-0ubuntu1_i386.deb Compizconfig bindings for Python
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