python-biopython-sql_1.70+dfsg-4_all.deb


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Description

python-biopython-sql - Biopython support for the BioSQL database schema (Python 2)

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename python-biopython-sql_1.70+dfsg-4_all.deb
Package name python-biopython-sql
Package version 1.70+dfsg
Package release 4
Package architecture all
Package type deb
Category universe/python
Homepage http://biopython.org
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 25.59 KB
Installed size 136.00 KB
This is the Biopython interface to a BioSQL database (see www.biosql.org
for details). BioPerl, BioJava and BioRuby also provide their own BioSQL
interfaces onto the same shared SQL schema.
This package is targeting Python version 2.

Alternatives

Package Version Architecture Repository
python-biopython-sql_1.70+dfsg-4_all.deb 1.70+dfsg all Ubuntu Universe
python-biopython-sql - - -

Requires

Name Value
python >= 2.7
python << 2.8
python-biopython -
python-mysqldb -
python:any >= 2.6.6-7~

Provides

Name Value
python2.7-biopython-sql -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package python-biopython-sql_1.70+dfsg-4_all.deb
Source Package python-biopython

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-biopython-sql deb package:
    # sudo apt-get install python-biopython-sql

Files

Path
/usr/lib/python2.7/dist-packages/BioSQL/BioSeq.py
/usr/lib/python2.7/dist-packages/BioSQL/BioSeqDatabase.py
/usr/lib/python2.7/dist-packages/BioSQL/DBUtils.py
/usr/lib/python2.7/dist-packages/BioSQL/Loader.py
/usr/lib/python2.7/dist-packages/BioSQL/__init__.py
/usr/share/doc/python-biopython-sql/changelog.Debian.gz
/usr/share/doc/python-biopython-sql/copyright

Changelog

2017-12-19 - Andreas Tille <tille@debian.org>
python-biopython (1.70+dfsg-4) unstable; urgency=medium
* Symlink to mathml2.dtd of w3-dtd-mathml package
Closes: #672407
* Standards-Version: 4.1.2
2017-11-07 - Andreas Tille <tille@debian.org>
python-biopython (1.70+dfsg-3) unstable; urgency=medium
* Copy *.rst doc files.
Closes: #872222
* Apply two upstream patches to deal with change in BWA output
Closes: #880236
* Drop duplicated python*-numpy in Build-Depends
* Standards-Version: 4.1.1
* Fix permission of dtd files
2017-07-31 - Steffen Moeller <moeller@debian.org>
python-biopython (1.70+dfsg-2) unstable; urgency=medium
* Team upload
* Fixed build dependencies (added python-setuptools) (Closes: #869597).
2017-07-23 - Steffen Moeller <moeller@debian.org>
python-biopython (1.70+dfsg-1) unstable; urgency=medium
* Team upload
* New upstream release.
* debian/upstream/metadata: Added references to
OMICtools, bio.tools, RRID
* debian/rules: Merged two redundant clean overrides
2017-01-20 - Andreas Tille <tille@debian.org>
python-biopython (1.68+dfsg-3) unstable; urgency=medium
* (Build-)Depend: phyml only on those architectures where it is available
* Relax test conditions in test_phenotype_fit to work around some rounding
differences on arm64
(see https://github.com/biopython/biopython/issues/1038 )
2017-01-15 - Andreas Tille <tille@debian.org>
python-biopython (1.68+dfsg-2) unstable; urgency=medium
* Add Tutorial.tex to *-doc package since its used in autopkgtest and
its just an ignorable payload for this package
* debhelper 10
* d/watch: version=4
* Add python-scipy since it is used in test suite
2016-08-29 - Andreas Tille <tille@debian.org>
python-biopython (1.68+dfsg-1) unstable; urgency=medium
* New upstream version
2016-06-09 - Andreas Tille <tille@debian.org>
python-biopython (1.67+dfsg-1) unstable; urgency=medium
* New upstream version
* Point d/watch to github
* xz compression in d/watch
* Take over patch from upstream to fix detection of rpsblast
* Skip test needing a network connection
* Add +bindnow hardening option
* Delete useless .cvsignore files from package
* New Build-Depends for documentation: hevea, texlive-latex-base,
texlive-latex-extra, texlive-fonts-recommended
* Makefile for Doc needs to be separately called (clean and build)
* Remove doc sources from binary doc package
2016-05-19 - Andreas Tille <tille@debian.org>
python-biopython (1.66+dfsg-3) unstable; urgency=medium
* Apply fix from upstream for test case dealing with new blastp output format
Closes: #824048
* cme fix dpkg-control
2016-03-09 - Andreas Tille <tille@debian.org>
python-biopython (1.66+dfsg-2) unstable; urgency=medium
* Packaging moved from SVN to Git
* Bumped Standards-Version
* Exclude phyml test for the moment
Closes: #813262

See Also

Package Description
python-biopython_1.70+dfsg-4_i386.deb Python library for bioinformatics (implemented in Python 2)
python-biosig_1.3.0-2.2build1_i386.deb Python bindings for BioSig library
python-biotools_1.2.12-2_all.deb Python bioinformatics utilities for high-throughput genomic sequencing
python-biplist_1.0.3-1_all.deb Python 2 library for reading/writing Mac OS X binary plists
python-bitarray_0.8.1-1build4_i386.deb Python module for efficient boolean array handling
python-bitbucket_0.1-1_all.deb Python bindings for the bitbucket.org REST API
python-bitcoin_1.1.42-1_all.deb library for cryptocurrency transactions — Python 2
python-bitstring-doc_3.1.5-1_all.deb Python module for manipulation of binary data (documentation)
python-bitstring_3.1.5-1_all.deb Python module for manipulation of binary data (Python 2)
python-bitstruct_3.4.0-1_all.deb Python bit pack/unpack package
python-bittorrent_3.4.2-12_all.deb Scatter-gather network file transfer
python-bjsonrpc_0.2.0-2_all.deb asynchronous bidirectional JSON-RPC protocol over TCP/IP
python-bleach-doc_2.1.2-1_all.deb whitelist-based HTML-sanitizing library (common documentation)
python-bleach_2.1.2-1_all.deb whitelist-based HTML-sanitizing library (Python 2)
python-blessed_1.14.2-3_all.deb Thin, practical wrapper around terminal capabilities in Python2
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