prank_0.0.170427+dfsg-1_i386.deb


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Description

prank - Probabilistic Alignment Kit for DNA, codon and amino-acid sequences

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename prank_0.0.170427+dfsg-1_i386.deb
Package name prank
Package version 0.0.170427+dfsg
Package release 1
Package architecture i386
Package type deb
Category universe/science
Homepage http://wasabiapp.org/software/prank/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 385.38 KB
Installed size 1.17 MB
PRANK is a probabilistic multiple alignment program for DNA, codon
and amino-acid sequences. It's based on a novel algorithm that treats
insertions correctly and avoids over-estimation of the number of
deletion events. In addition, PRANK borrows ideas from maximum
likelihood methods used in phylogenetics and correctly takes into
account the evolutionary distances between sequences. Lastly, PRANK
allows for defining a potential structure for sequences to be aligned
and then, simultaneously with the alignment, predicts the locations
of structural units in the sequences.
PRANK is a command-line program for UNIX-style environments but the
same sequence alignment engine is implemented in the graphical
program PRANKSTER. In addition to providing a user-friendly interface
to those not familiar with Unix systems, PRANKSTER is an alignment
browser for alignments saved in the HSAML format. The novel format
allows for storing all the information generated by the aligner and
the alignment browser is a convenient way to analyse and manipulate
the data.
PRANK aims at an evolutionarily correct sequence alignment and often
the result looks different from ones generated with other alignment
methods. There are, however, cases where the different look is caused
by violations of the method's assumptions. To understand why things
may go wrong and how to avoid that, read this explanation of
differences between PRANK and traditional progressive alignment
methods.

Alternatives

Package Version Architecture Repository
prank_0.0.170427+dfsg-1_amd64.deb 0.0.170427+dfsg amd64 Ubuntu Universe
prank - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Mirror archive.ubuntu.com
Binary Package prank_0.0.170427+dfsg-1_i386.deb
Source Package prank

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install prank deb package:
    # sudo apt-get install prank

Files

Path
/usr/bin/prank
/usr/share/doc/prank/README.test
/usr/share/doc/prank/changelog.Debian.gz
/usr/share/doc/prank/copyright
/usr/share/doc/prank/run-unit-test
/usr/share/doc/prank/examples/sample.cdna.fasta.gz
/usr/share/man/man1/prank.1.gz

Changelog

2017-09-12 - Andreas Tille <tille@debian.org>
prank (0.0.170427+dfsg-1) unstable; urgency=medium
* New upstream version
* Exclude .git repository from upstream source
* debhelper 10
* Standards-Version: 4.1.0 (no changes needed)
2017-03-23 - Büşra Selin Pekişçi <busra.pekisci@gmail.com>
prank (0.0.150803-3) experimental; urgency=medium
* Team upload
[ Andreas Tille ]
* Move packaging from SVN to Git
[ Büşra Selin Pekişçi ]
* Autopkgtest added
Closes: #848329
2016-05-13 - Sascha Steinbiss <sascha@steinbiss.name>
prank (0.0.150803-2) unstable; urgency=medium
* Team upload.
[ Andreas Tille ]
* New homepage
* d/watch: Adapt to new location
* d/copyright: Upstream-Contact
[ Sascha Steinbiss ]
* Fix building with GCC 6
Closes: #811827
* Enable full hardening.
* Bump Standards-Version.
* Use secure Vcs-*.
2015-11-27 - Steffen Moeller <moeller@edebiaan.org>
prank (0.0.150803-1) unstable; urgency=medium
* New upstream version.
* Team upload.
2014-01-28 - Andreas Tille <tille@debian.org>
prank (0.0.140110-1) unstable; urgency=medium
* New upstream version
2013-11-13 - Andreas Tille <tille@debian.org>
prank (0.0.130820-1) unstable; urgency=low
* Initial upload to Debian (Closes: #627391)

See Also

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prayer_1.3.5-dfsg1-4build1_i386.deb standalone IMAP-based webmail server
prboom-plus-game-server_2.5.1.5+svn4531+dfsg1-1_i386.deb enhanced clone of the classic first-person shooter Doom (server)
prboom-plus_2.5.1.5+svn4531+dfsg1-1_i386.deb enhanced clone of the classic first-person shooter Doom
prctl_1.6-1build1_i386.deb Process control operations
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predictnls_1.0.20-4_all.deb prediction and analysis of protein nuclear localization signals
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prelink_0.0.20131005-1_i386.deb ELF prelinking utility to speed up dynamic linking
preload_0.6.4-2build1_i386.deb adaptive readahead daemon
prelude-correlator_4.1.1-2_all.deb Security Information and Events Management System [ Correlator ]
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