plink1.9_1.90~b5.2-180109-1_i386.deb


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Description

plink1.9 - whole-genome association analysis toolset

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename plink1.9_1.90~b5.2-180109-1_i386.deb
Package name plink1.9
Package version 1.90~b5.2
Package release 180109-1
Package architecture i386
Package type deb
Category universe/science
Homepage https://www.cog-genomics.org/plink/1.9/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 839.17 KB
Installed size 2.28 MB
plink expects as input the data from SNP (single nucleotide polymorphism)
chips of many individuals and their phenotypical description of a disease.
It finds associations of single or pairs of DNA variations with a phenotype
and can retrieve SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their association with the
disease phenotypes. The joint investigation of copy number variations is
supported. A variety of statistical tests have been implemented.
plink1.9 is a comprehensive update of plink with new algorithms and new
methods, faster and less memory consumer than the first plink.
Please note: The executable was renamed to plink1.9
because of a name clash.  Please read more about this
in /usr/share/doc/plink1.9/README.Debian.

Alternatives

Package Version Architecture Repository
plink1.9_1.90~b5.2-180109-1_amd64.deb 1.90~b5.2 amd64 Ubuntu Universe
plink1.9 - - -

Requires

Name Value
libatlas3-base -
libc6 >= 2.4
libgcc1 >= 1:4.2
liblapack.so.3 -
liblapack3 -
libstdc++6 >= 5
zlib1g >= 1:1.2.6

Download

Type URL
Mirror archive.ubuntu.com
Binary Package plink1.9_1.90~b5.2-180109-1_i386.deb
Source Package plink1.9

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install plink1.9 deb package:
    # sudo apt-get install plink1.9

Files

Path
/usr/bin/plink1.9
/usr/lib/debian-med/bin/plink1.9
/usr/lib/debian-med/share/man/man1/plink1.9.1.gz
/usr/share/doc/plink1.9/README.Debian
/usr/share/doc/plink1.9/changelog.Debian.gz
/usr/share/doc/plink1.9/copyright
/usr/share/doc/plink1.9/examples/README
/usr/share/doc/plink1.9/examples/expected.plink.assoc
/usr/share/doc/plink1.9/examples/expected.plink.frq
/usr/share/doc/plink1.9/examples/run-sample-analysis
/usr/share/doc/plink1.9/examples/toy.map
/usr/share/doc/plink1.9/examples/toy.ped
/usr/share/man/man1/plink1.9.1.gz

Changelog

2018-01-12 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b5.2-180109-1) unstable; urgency=medium
* New upstream release.
* Bump Standards-Version: 4.1.3 (no changes needed).
* Bump debhelper compat 11.
2017-11-30 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b5-171114-1) unstable; urgency=medium
* New upstream release.
* Remove 01.Fix_Makefile.patch applied upstream.
2017-11-03 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b4.9-171013-1) unstable; urgency=medium
* New upstream release.
* Bump Standards-Version: 4.1.1 (no changes needed).
* Remove trailing whitespace characters in d/changelog.
2017-09-15 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b4.7-170906-1) unstable; urgency=medium
* New upstream release.
* Add references to registries.
* Update 01.Fix_Makefile.patch.
* Bump Standards-Version to 4.1.0.
* Remove Testsuite field from d/control, now automatically added.
* cme fix dpkg-control.
2017-06-25 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b4.4-170531-2) unstable; urgency=medium
* Upload to unstable, Stretch freeze is over.
2017-06-06 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b4.4-170531-1) experimental; urgency=medium
* New upstream release.
2017-04-17 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b4.1-170330-1) experimental; urgency=medium
* New upstream release.
* Update upstream website.
* Remove 01.Makefile_config.patch & 02_Activate_Stable_Build.patch,
inject flags using d/rules instead.
* Add 01.Fix_Makefile.patch to take into account the injected flags.
2017-02-22 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3.46-170213-1) experimental; urgency=medium
* New upstream release.
2017-01-16 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3.45-170113-1) unstable; urgency=medium
* New upstream release.
* Refresh patch.
* Update d/copyright: 2017.
2016-11-22 - Dylan Aïssi <bob.dybian@gmail.com>
plink1.9 (1.90~b3.44-161117-1) unstable; urgency=medium
* New upstream release.
* Bump debhelper 10.
* Bump watch file v4.
* Update patch to configure makefile for dynamic linking and hardening.

See Also

Package Description
plink_1.07+dfsg-1_i386.deb whole-genome association analysis toolset
plinth_0.24.0_all.deb web front end for administering every aspect of a FreedomBox
plip_1.3.5+dfsg-1_all.deb fully automated protein-ligand interaction profiler
plm_2.6+repack-3_all.deb Programming exerciser in Java, Python, Scala and others
ploop_1.15-5_i386.deb tools to work with ploop devices and images
plopfolio.app_0.1.0-7build2_i386.deb Personal dashboard for GNUstep
plotdrop_0.5.4-1_i386.deb minimal GNOME frontend to GNUPlot
ploticus_2.42-4_i386.deb script driven business graphics package
plotnetcfg_0.4.1-2_i386.deb local networking configuration diagram plotter
plotutils_2.6-9_i386.deb GNU plotutils command line tools based on libplot
plowshare-modules_0~git20171112.e94a905-1_all.deb plowshare drivers for various file sharing websites
plowshare4_2.1.7-1_all.deb transitional dummy package
plowshare_2.1.7-1_all.deb download and upload files from file sharing websites
plplot-doc_5.13.0+dfsg-6ubuntu2_all.deb Documentation for PLplot, a plotting library
plplot-driver-cairo_5.13.0+dfsg-6ubuntu2_i386.deb Scientific plotting library (Cairo driver)
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