pirs-profiles_2.0.2+dfsg-6_all.deb


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Description

pirs-profiles - profile basd Illumina pair-end Reads Simulator (profile data)

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename pirs-profiles_2.0.2+dfsg-6_all.deb
Package name pirs-profiles
Package version 2.0.2+dfsg
Package release 6
Package architecture all
Package type deb
Category universe/science
Homepage https://github.com/galaxy001/pirs
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 2.44 MB
Installed size 2.48 MB
The program pIRS can be used for simulating Illumina PE reads, with a
series of characters generated by Illumina sequencing platform, such as
insert size distribution, sequencing error(substitution, insertion,
deletion), quality score and GC content-coverage bias.
The insert size follows a normal distribution, so users should set the
mean value and standard deviation. Usually the standard deviation is set
as 1/20 of the mean value. The normal distribution by Box-Muller method
is simulated.
The program simulates sequencing error, quality score and GC content-
coverage bias according to the empirical distribution profile. Some
default profiles counted from lots of real sequencing data are provided.
To simulate reads from diploid genome, users should simulate the diploid
genome sequence firstly by setting the ratio of heterozygosis SNP,
heterozygosis InDel and structure variation.
This package contains the profile data.

Alternatives

Package Version Architecture Repository
pirs-profiles_2.0.2+dfsg-6_all.deb 2.0.2+dfsg all Ubuntu Universe
pirs-profiles - - -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package pirs-profiles_2.0.2+dfsg-6_all.deb
Source Package pirs

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install pirs-profiles deb package:
    # sudo apt-get install pirs-profiles

Files

Path
/usr/share/doc/pirs-profiles/changelog.Debian.gz
/usr/share/doc/pirs-profiles/copyright
/usr/share/pirs/Base-Calling_Profiles/HG00513.PE76.matrix.gz
/usr/share/pirs/Base-Calling_Profiles/HG00536.PE76.matrix.gz
/usr/share/pirs/Base-Calling_Profiles/HG00702.PE91.matrix.gz
/usr/share/pirs/Base-Calling_Profiles/humNew.PE100.matrix.gz
/usr/share/pirs/GC-depth_Profiles/humNew.gcdep_100.dat
/usr/share/pirs/GC-depth_Profiles/humNew.gcdep_150.dat
/usr/share/pirs/GC-depth_Profiles/humNew.gcdep_200.dat
/usr/share/pirs/InDel_Profiles/phixv2.InDel.matrix

Changelog

2017-09-14 - Andreas Tille <tille@debian.org>
pirs (2.0.2+dfsg-6) unstable; urgency=medium
* Do not disable PIE (thanks for the patch to Adrian Bunk <bunk@debian.org>)
Closes: #865655
* Standards-Version: 4.1.0 (no changes needed)
* Depends: s/ttf-liberation/fonts-liberation/
Closes: #861367
* Drop autoreconf dependency which is useless with debhelper 10
* d/rules: Do not parse d/changelog
* Remove unused lintian override
2017-01-14 - John Paul Adrian Glaubitz <glaubitz@physik.fu-berlin.de>
pirs (2.0.2+dfsg-5.1) unstable; urgency=medium
* Non-maintainer upload.
* Add patch to remove -mtune from compiler flags for gcContCvgBias
* Don't disable SSE2 support on kfreebsd-amd64 and x32
2017-01-14 - Andreas Tille <tille@debian.org>
pirs (2.0.2+dfsg-5) unstable; urgency=medium
* Do not use non-free font arial.ttf but rather LiberationSans-Regular.ttf
from ttf-liberation (this also fixes autopkgtest)
2016-12-19 - Andreas Tille <tille@debian.org>
pirs (2.0.2+dfsg-4) unstable; urgency=medium
* Really fix build for -A
Closes: #847339
2016-12-07 - Andreas Tille <tille@debian.org>
pirs (2.0.2+dfsg-3) unstable; urgency=medium
* Fix build for -A
Closes: #847339
* debhelper 10
* d/watch: version=4
2016-11-30 - Ghislain Antony Vaillant <ghisvail@gmail.com>
pirs (2.0.2+dfsg-2) unstable; urgency=medium
* Team upload.
[ Ghislain Antony Vaillant ]
* Add patch fixing spelling of sse2 option.
* Disable SSE2 optimization for all but amd64.
Thanks to John Paul Adrian Glaubitz for reporting (Closes: #846330)
2016-08-29 - Andreas Tille <tille@debian.org>
pirs (2.0.2+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #835935)

See Also

Package Description
pirs_2.0.2+dfsg-6_i386.deb Profile based Illumina pair-end Reads Simulator
pisg_0.73-1_all.deb Perl IRC Statistics Generator
pithos_1.1.2-1_all.deb Pandora Radio client for the GNOME desktop
pitivi_0.99-3_i386.deb non-linear audio/video editor using GStreamer
piu-piu_1.0-1_all.deb Horizontal scroller game in bash for cli
piuparts-common_0.84_all.deb common piuparts components
piuparts-master_0.84_i386.deb piuparts master components
piuparts-slave_0.84_all.deb piuparts slave components
piuparts_0.84_all.deb .deb package installation, upgrading, and removal testing tool
pius_2.2.4-1_all.deb Tools to help before and after key-signing parties
piwi_0.8+20041206-4_all.deb P(erl|relude) IDS Web Interface - A frontend to your Prelude database
pixbros_0.6.3+dfsg-0.1_i386.deb 2D game inspired in Bubble Bobble, Snow Bros and Tumble Pop
pixelize_1.0.0-1build1_i386.deb Create an image consisting of many small images
pixelmed-apps_20150917-2_all.deb DICOM implementation containing Image Viewer and a ECG Viewer - jnlp
pixelmed-webstart-apps_20150917-2_all.deb DICOM implementation containing Image Viewer and a ECG Viewer - jnlp
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