phybin - binning/clustering newick trees by topology

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename phybin_0.3-1_i386.deb
Package name phybin
Package version 0.3
Package release 1
Package architecture i386
Package type deb
Category universe/science
License -
Maintainer Ubuntu Developers <>
Download size 1.59 MB
Installed size 9.69 MB
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).


Package Version Architecture Repository
phybin_0.3-1_amd64.deb 0.3 amd64 Ubuntu Universe
phybin - - -


Name Value
libc6 >= 2.15
libffi6 >= 3.0.4
libgmp10 -


Type URL
Binary Package phybin_0.3-1_i386.deb
Source Package phybin

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install phybin deb package:
    # sudo apt-get install phybin




2015-12-18 - Andreas Tille <>
phybin (0.3-1) unstable; urgency=low
* Initial release (Closes: #808326)

See Also

Package Description
phylip-doc_3.696+dfsg-5_all.deb package of programs for inferring phylogenies (documentation)
phylip_3.696+dfsg-5_i386.deb package of programs for inferring phylogenies
phyml_3.3.20170530+dfsg-2_i386.deb Phylogenetic estimation using Maximum Likelihood
physamp_1.1.0-1_i386.deb sample sequence alignment corresponding to phylogeny
physlock_11-1_i386.deb lightweight Linux console locking tool
phyutility_2.7.3-1_i386.deb simple analyses or modifications on both phylogenetic trees and data matrices
pi_1.3.4-2_i386.deb Compute Archimedes' constant Pi to arbitrary precision
pia_3.103-4build1_i386.deb movie player for xawtv
pianobar_2017.08.30-1_i386.deb console based player for Pandora radio
pianobooster_0.6.7~svn156-1_i386.deb learn the piano just by playing a game
picard-tools_2.8.1+dfsg-3_all.deb Command line tools to manipulate SAM and BAM files
picard_1.4.2-1_i386.deb Next-Generation MusicBrainz audio files tagger
pick_2.0.1-1_i386.deb utility to choose one option from a set of choices
picmi_17.12.3-0ubuntu1_i386.deb Number logic game
picocom_2.2-2_i386.deb minimal dumb-terminal emulation program