mafft_7.310-1_i386.deb


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Description

mafft - Multiple alignment program for amino acid or nucleotide sequences

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename mafft_7.310-1_i386.deb
Package name mafft
Package version 7.310
Package release 1
Package architecture i386
Package type deb
Category universe/science
Homepage http://mafft.cbrc.jp/alignment/software/
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 825.77 KB
Installed size 9.57 MB
MAFFT is a multiple sequence alignment program which offers three
accuracy-oriented methods:
* L-INS-i (probably most accurate; recommended for <200 sequences;
iterative refinement method incorporating local pairwise alignment
information),
* G-INS-i (suitable for sequences of similar lengths; recommended for
<200 sequences; iterative refinement method incorporating global
pairwise alignment information),
* E-INS-i (suitable for sequences containing large unalignable regions;
recommended for <200 sequences),
and five speed-oriented methods:
* FFT-NS-i (iterative refinement method; two cycles only),
* FFT-NS-i (iterative refinement method; max. 1000 iterations),
* FFT-NS-2 (fast; progressive method),
* FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
method with a rough guide tree),
* NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
method with the PartTree algorithm).

Alternatives

Package Version Architecture Repository
mafft_7.310-1_amd64.deb 7.310 amd64 Ubuntu Universe
mafft - - -

Requires

Name Value
libc6 >= 2.7
perl:any -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package mafft_7.310-1_i386.deb
Source Package mafft

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mafft deb package:
    # sudo apt-get install mafft

Files

Path
/usr/bin/mafft
/usr/bin/mafft-homologs
/usr/bin/mafft-profile
/usr/lib/mafft/bin/einsi
/usr/lib/mafft/bin/fftns
/usr/lib/mafft/bin/fftnsi
/usr/lib/mafft/bin/ginsi
/usr/lib/mafft/bin/linsi
/usr/lib/mafft/bin/mafft
/usr/lib/mafft/bin/mafft-distance
/usr/lib/mafft/bin/mafft-einsi
/usr/lib/mafft/bin/mafft-fftns
/usr/lib/mafft/bin/mafft-fftnsi
/usr/lib/mafft/bin/mafft-ginsi
/usr/lib/mafft/bin/mafft-homologs.rb
/usr/lib/mafft/bin/mafft-linsi
/usr/lib/mafft/bin/mafft-nwns
/usr/lib/mafft/bin/mafft-nwnsi
/usr/lib/mafft/bin/mafft-profile
/usr/lib/mafft/bin/mafft-qinsi
/usr/lib/mafft/bin/mafft-sparsecore.rb
/usr/lib/mafft/bin/mafft-xinsi
/usr/lib/mafft/bin/nwns
/usr/lib/mafft/bin/nwnsi
/usr/lib/mafft/lib/mafft/addsingle
/usr/lib/mafft/lib/mafft/contrafoldwrap
/usr/lib/mafft/lib/mafft/countlen
/usr/lib/mafft/lib/mafft/disttbfast
/usr/lib/mafft/lib/mafft/dndblast
/usr/lib/mafft/lib/mafft/dndfast7
/usr/lib/mafft/lib/mafft/dndpre
/usr/lib/mafft/lib/mafft/dvtditr
/usr/lib/mafft/lib/mafft/f2cl
/usr/lib/mafft/lib/mafft/getlag
/usr/lib/mafft/lib/mafft/mafft-distance
/usr/lib/mafft/lib/mafft/mafft-profile
/usr/lib/mafft/lib/mafft/mafftash_premafft.pl
/usr/lib/mafft/lib/mafft/makedirectionlist
/usr/lib/mafft/lib/mafft/mccaskillwrap
/usr/lib/mafft/lib/mafft/multi2hat3s
/usr/lib/mafft/lib/mafft/pairash
/usr/lib/mafft/lib/mafft/pairlocalalign
/usr/lib/mafft/lib/mafft/regtable2seq
/usr/lib/mafft/lib/mafft/replaceu
/usr/lib/mafft/lib/mafft/restoreu
/usr/lib/mafft/lib/mafft/score
/usr/lib/mafft/lib/mafft/seekquencer_premafft.pl
/usr/lib/mafft/lib/mafft/seq2regtable
/usr/lib/mafft/lib/mafft/setcore
/usr/lib/mafft/lib/mafft/setdirection
/usr/lib/mafft/lib/mafft/sextet5
/usr/lib/mafft/lib/mafft/splittbfast
/usr/lib/mafft/lib/mafft/tbfast
/usr/lib/mafft/lib/mafft/version
/usr/share/doc/mafft/changelog.Debian.gz
/usr/share/doc/mafft/copyright
/usr/share/doc/mafft/test/sample
/usr/share/doc/mafft/test/sample.dpparttree
/usr/share/doc/mafft/test/sample.fftns2
/usr/share/doc/mafft/test/sample.fftnsi
/usr/share/doc/mafft/test/sample.gins1
/usr/share/doc/mafft/test/sample.ginsi
/usr/share/doc/mafft/test/sample.ginsi.allowshift
/usr/share/doc/mafft/test/sample.lins1
/usr/share/doc/mafft/test/sample.linsi
/usr/share/doc/mafft/test/sample.parttree
/usr/share/doc/mafft/test/samplerna
/usr/share/doc/mafft/test/samplerna.qinsi
/usr/share/doc/mafft/test/samplerna.xinsi
/usr/share/doc/mafft/test/script
/usr/share/man/man1/einsi.1.gz
/usr/share/man/man1/fftns.1.gz
/usr/share/man/man1/fftnsi.1.gz
/usr/share/man/man1/ginsi.1.gz
/usr/share/man/man1/linsi.1.gz
/usr/share/man/man1/mafft-einsi.1.gz
/usr/share/man/man1/mafft-fftns.1.gz
/usr/share/man/man1/mafft-fftnsi.1.gz
/usr/share/man/man1/mafft-ginsi.1.gz
/usr/share/man/man1/mafft-homologs.1.gz
/usr/share/man/man1/mafft-linsi.1.gz
/usr/share/man/man1/mafft-profile.1.gz
/usr/share/man/man1/mafft.1.gz

Changelog

2017-09-12 - Andreas Tille <tille@debian.org>
mafft (7.310-1) unstable; urgency=medium
* New upstream version
* Move packaging from SVN to Git
* Standards-Version: 4.1.0 (no changes needed)
2017-01-09 - Andreas Tille <tille@debian.org>
mafft (7.307-1) unstable; urgency=medium
* New upstream version
* debhelper 10
* update d/copyright
* d/watch: version=4
2016-08-16 - Andreas Tille <tille@debian.org>
mafft (7.305-1) unstable; urgency=medium
* New upstream version
2016-05-18 - Andreas Tille <tille@debian.org>
mafft (7.294-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* /usr/bin/mafft-sparsecore.rb is non-zero - remove the test in debian/rules
* Better hardening
2016-01-27 - Andreas Tille <tille@debian.org>
mafft (7.271-1) unstable; urgency=medium
* New upstream version
2015-12-30 - Andreas Tille <tille@debian.org>
mafft (7.270-1) unstable; urgency=medium
* New upstream version
2015-12-05 - Andreas Tille <tille@debian.org>
mafft (7.266-1) unstable; urgency=medium
* New upstream version
* Fix bashism
Closes: #772305
2015-07-27 - Andreas Tille <tille@debian.org>
mafft (7.245-1) unstable; urgency=medium
* New upstream version
2015-05-29 - Andreas Tille <tille@debian.org>
mafft (7.221-1) unstable; urgency=medium
* New upstream version
2015-02-28 - Andreas Tille <tille@debian.org>
mafft (7.215-1) experimental; urgency=medium
* Upload to experimental

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