dindel - determines indel calls from short-read data

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe i386
Package filename dindel_1.01+dfsg-4build2_i386.deb
Package name dindel
Package version 1.01+dfsg
Package release 4build2
Package architecture i386
Package type deb
Category universe/science
Homepage https://sites.google.com/site/keesalbers/soft/dindel
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 346.93 KB
Installed size 972.00 KB
Dindel is a program for calling small indels from short-read sequence
data ('next generation sequence data'). It currently is designed to
handle only Illumina data.
Dindel requires a BAM file containing the read-alignments as input. It
then extracts candidate indels from the BAM file, and realigns the reads
to candidate haplotypes consisting of these candidate indels. If there
is sufficient evidence for an alternative haplotype to the reference,
it will call an indel.
It is possible to test indels discovered with other methods using Dindel,
for instance longer indels obtained through assembly methods. Dindel
will then realign both mapped and unmapped reads to see if the candidate
indel is supported by the reads.
Dindel outputs both genotype likelihoods and includes a script to
convert these to a VCF file with indel and SNP calls.
There is basic support for outputting realigned BAM files for each
realignment-window. These realigned BAM files can be used to call SNPs
near (candidate) indels.


Package Version Architecture Repository
dindel_1.01+dfsg-4build2_amd64.deb 1.01+dfsg amd64 Ubuntu Universe
dindel - - -


Name Value
libboost-program-options1.65.1 -
libc6 >= 2.15
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
zlib1g >= 1:


Type URL
Mirror archive.ubuntu.com
Binary Package dindel_1.01+dfsg-4build2_i386.deb
Source Package dindel

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install dindel deb package:
    # sudo apt-get install dindel




2017-10-26 - Matthias Klose <doko@ubuntu.com>
dindel (1.01+dfsg-4build2) bionic; urgency=medium
* No-change rebuild for boost soname change.
2016-11-01 - Dimitri John Ledkov <xnox@ubuntu.com>
dindel (1.01+dfsg-4build1) zesty; urgency=high
* No change rebuild against boost1.62.
2016-08-10 - Sascha Steinbiss <satta@debian.org>
dindel (1.01+dfsg-4) unstable; urgency=medium
* Team upload.
* Make code compatible with latest Boost version (1.61 and up).
Thanks to Graham Inggs for the patch.
Closes: #833958
2016-08-06 - Sascha Steinbiss <satta@debian.org>
dindel (1.01+dfsg-3) unstable; urgency=medium
* Team upload.
* Force use of Boost 1.58 to fix FTBFS with newer Boost versions.
* Bump Standards-Version.
* d/copyright: Reorder items.
* d/copyright: Use secure Format URL.
2016-08-03 - Sascha Steinbiss <satta@debian.org>
dindel (1.01+dfsg-2) unstable; urgency=medium
* Team upload.
* Fix FTBFS with GCC 6.
Closes: #831208
2016-03-18 - Animesh Sharma <sharma.animesh@gmail.com>
dindel (1.01+dfsg-1) unstable; urgency=low
* Initial release (Closes: #818605)

See Also

Package Description
ding_1.8.1-3_all.deb Graphical dictionary lookup program for Unix (Tk)
dino-im-common_0.0.git20180130-1_all.deb modern XMPP client - common files
dino-im_0.0.git20180130-1_i386.deb modern XMPP client
diod_1.0.24-3_i386.deb I/O forwarding server for 9P
diodon-dev_1.8.0-1_i386.deb GTK+ Clipboard manager (development files)
diodon_1.8.0-1_i386.deb GTK+ Clipboard manager
diploma_1.2.14_all.deb Write scientific papers with Debian
dir2ogg_0.12-1_all.deb audio file converter into ogg-vorbis format
dirb_2.22+dfsg-3_i386.deb URL bruteforcing tool
dircproxy_1.0.5-6ubuntu2_i386.deb IRC proxy for people who use IRC from different workstations
dirdiff_2.1-7.1_i386.deb Display and merge changes between two directory trees
directoryassistant_2.0-1.1_all.deb small LDAP address book manager
directvnc_0.7.7-1build1_i386.deb VNC client using the framebuffer as display
direnv_2.15.0-1_i386.deb Utility to set directory specific environment variables
direvent_5.1-1_i386.deb monitors events in the file system directories