probalign_1.4-7_amd64.deb


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Description

probalign - multiple sequence alignment using partition function posterior probabilities

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package filename probalign_1.4-7_amd64.deb
Package name probalign
Package version 1.4
Package release 7
Package architecture amd64
Package type deb
Category universe/science
Homepage http://probalign.njit.edu/standalone.html
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 63.45 KB
Installed size 163.00 KB
Probalign uses partition function posterior probability estimates to
compute maximum expected accuracy multiple sequence alignments. It
performs statistically significantly better than the leading alignment
programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0,
HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on
datasets containing N/C terminal extensions and on datasets with long
and heterogeneous length sequences. On heteregeneous length datasets
containing repeats Probalign alignment accuracy is 10% and 15% higher
than the other three methods when standard deviation of length is at
least 300 and 400.

Alternatives

Package Version Architecture Repository
probalign_1.4-7_i386.deb 1.4 i386 Ubuntu Universe
probalign - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Mirror archive.ubuntu.com
Binary Package probalign_1.4-7_amd64.deb
Source Package probalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install probalign deb package:
    # sudo apt-get install probalign

Files

Path
/usr/bin/probalign
/usr/share/doc/probalign/README
/usr/share/doc/probalign/README.test
/usr/share/doc/probalign/changelog.Debian.gz
/usr/share/doc/probalign/copyright
/usr/share/doc/probalign/run-unit-test
/usr/share/doc/probalign/test_data_n.fas
/usr/share/doc/probalign/test_data_p.fas
/usr/share/man/man1/probalign.1.gz

Changelog

2017-11-16 - Andreas Tille <tille@debian.org>
probalign (1.4-7) unstable; urgency=medium
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
* d/rules: do not parse d/changelog
2017-07-06 - Nadiya Sitdykova <rovenskasa@gmail.com>
probalign (1.4-6) unstable; urgency=medium
* Team upload.
[ Sascha Steinbiss ]
* Enable full hardening.
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite
2016-11-08 - Andreas Tille <tille@debian.org>
probalign (1.4-5) unstable; urgency=medium
* Fix homepage
* Fix watch file
* cme fix dpkg-control
2015-12-17 - Andreas Tille <tille@debian.org>
probalign (1.4-4) unstable; urgency=medium
* cme fix dpkg-control
* Fix Mayhem issue
Closes: #716548
2013-11-14 - Andreas Tille <tille@debian.org>
probalign (1.4-3) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream
- fix typo (s/TITILE/TITLE/)
- moved DOI+PMID to references
- separate authors by ' and '
- added eprint
* debian/control:
- cme fix dpkg-control
- debhelper 9
- removed quilt Build-Depends
- canonical Vcs URLs
* debian/copyright: DEP5
* debian/patches/hardening.patch: Propagate hardening options
[ Charles Plessy ]
* Add missing word in long description (Closes: #703253). 
2011-05-02 - Andreas Tille <tille@debian.org>
probalign (1.4-2) unstable; urgency=low
* Standards-Version: 3.9.2 (no changes needed)
* Debhelper 8 (control+compat)
* debian/patches/fix-gcc-4.6.patch
Closes: #624979
2011-02-02 - Andreas Tille <tille@debian.org>
probalign (1.4-1) unstable; urgency=low
* Initial release (Closes: #611828)
(reupload with LGPL-3 license for debian/*)

See Also

Package Description
probcons-extra_1.12-11_amd64.deb Extra programs from the probcons package
probcons_1.12-11_amd64.deb PROBabilistic CONSistency-based multiple sequence alignment
probert_0.0.14.1build2_amd64.deb Hardware probing tool
procenv_0.50-1_amd64.deb Utility to show process environment
procinfo_2.0.304-3_amd64.deb tools to display information from /proc and /sys
procmail-lib_2009.1202-4_all.deb procmail library of plug-in recipes
procmeter3_3.6-1_amd64.deb graphical system status monitor
procserv_2.7.0-1_amd64.deb Process server with telnet console and log access
procyon-decompiler_0.5.32-3_all.deb Procyon Java Decompiler
proda_1.0-11_amd64.deb multiple alignment of protein sequences
prodigal_2.6.3-1_amd64.deb Microbial (bacterial and archaeal) gene finding program
profanity_0.5.1-3_amd64.deb console based XMPP client
profbval_1.0.22-5_all.deb predictor of flexible/rigid protein residues from sequence
profile-sync-daemon_6.31-1_all.deb Symlink and sync browser profile directories into RAM
profisis_1.0.11-4_all.deb prediction of protein-protein interaction sites from sequence
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