metaphlan2-data_2.6.0+ds-3_all.deb


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Description

metaphlan2-data - data package for Metagenomic Phylogenetic Analysis

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package filename metaphlan2-data_2.6.0+ds-3_all.deb
Package name metaphlan2-data
Package version 2.6.0+ds
Package release 3
Package architecture all
Package type deb
Category universe/science
Homepage https://bitbucket.org/biobakery/metaphlan2
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 194.86 MB
Installed size 735.46 MB
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from
metagenomic shotgun sequencing data with species level resolution. From
version 2.0, MetaPhlAn is also able to identify specific strains (in the
not-so-frequent cases in which the sample contains a previously
sequenced strains) and to track strains across samples for all species.
MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the
marker information file can be found at src/utils/markers_info.txt.bz2
or here) identified from ~17,000 reference genomes (~13,500 bacterial
and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
This package contains the data for metaphlan2.

Alternatives

Package Version Architecture Repository
metaphlan2-data_2.6.0+ds-3_all.deb 2.6.0+ds all Ubuntu Universe
metaphlan2-data - - -

Requires

Name Value
bowtie2 -
debconf >= 0.5
debconf-2.0 -

Download

Type URL
Mirror archive.ubuntu.com
Binary Package metaphlan2-data_2.6.0+ds-3_all.deb
Source Package metaphlan2-data

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install metaphlan2-data deb package:
    # sudo apt-get install metaphlan2-data

Files

Path
/usr/sbin/metaphlan2-data-convert
/usr/share/doc/metaphlan2-data/changelog.Debian.gz
/usr/share/doc/metaphlan2-data/copyright
/usr/share/man/man8/metaphlan2-data-convert.8.gz
/var/lib/metaphlan2-data/bt2.md5
/var/lib/metaphlan2-data/markers.fasta

Changelog

2017-12-05 - Andreas Tille <tille@debian.org>
metaphlan2-data (2.6.0+ds-3) unstable; urgency=medium
* Dutch translation of debconf messages
Closes: #841652
* Portuguese translation for debconf messages
Closes: #859333
* Russian translation of debconf template
Closes: #883210
* debhelper 10
* Standards-Version: 4.1.1
2016-10-18 - Andreas Tille <tille@debian.org>
metaphlan2-data (2.6.0+ds-2) unstable; urgency=medium
* postrm needs to remove files created in postinst
Closes: #840971
* French debconf template
Closes: #841039
2016-09-07 - Andreas Tille <tille@debian.org>
metaphlan2-data (2.6.0+ds-1) unstable; urgency=medium
* Initial release (Closes: #836956)

See Also

Package Description
metaphlan2_2.7.5-1_all.deb Metagenomic Phylogenetic Analysis
metapixel_1.0.2-7.4build1_amd64.deb generator for photomosaics
metar_20061030.1-2.2_amd64.deb utility to download/decode METAR reports
metastore_1.1.2-2_amd64.deb Store and restore metadata from a filesystem
metastudent-data-2_1.0.0-3_all.deb predictor of Gene Ontology terms from protein sequence - data #2
metastudent-data_2.0.1-3_all.deb predictor of Gene Ontology terms from protein sequence - data files
metastudent_2.0.1-5_all.deb predictor of Gene Ontology terms from protein sequence
metche_1.2.4-1_all.deb configuration monitor to ease collective administration
meterbridge_0.9.2-13_amd64.deb Collection of Audio meters for the JACK audio server
meterec_0.9.2~ds0-2build1_amd64.deb minimalistic multi track recorder
metis_5.1.0.dfsg-5_amd64.deb Serial Graph Partitioning and Fill-reducing Matrix Ordering. Binaries
metview-data_5.0.0~beta.1-1build1_all.deb Data needed for the Metview data analysis environment
metview_5.0.0~beta.1-1build1_amd64.deb Interactive data visualization and analysis environment,
mew-beta-bin_7.0.50~6.7+0.20170719-1_amd64.deb external commands for Mew (development version)
mew-beta_7.0.50~6.7+0.20170719-1_all.deb mail reader supporting PGP/MIME for Emacs (development version)
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