meryl_0~20150903+r2013-3_amd64.deb


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Description

meryl - in- and out-of-core kmer counting and utilities

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package filename meryl_0~20150903+r2013-3_amd64.deb
Package name meryl
Package version 0~20150903+r2013
Package release 3
Package architecture amd64
Package type deb
Category universe/science
Homepage http://kmer.sourceforge.net
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 190.87 KB
Installed size 1.40 MB
meryl computes the kmer content of genomic sequences.  Kmer
content is represented as a list of kmers and the number of
times each occurs in the input sequences.  The kmer can be
restricted to only the forward kmer, only the reverse kmer,
or the canonical kmer (lexicographically smaller of the
forward and reverse kmer at each location).  Meryl can
report the histogram of counts, the list of kmers and their
counts, or can perform mathematical and set operations
on the processed data files.
This package is part of the Kmer suite.

Alternatives

Package Version Architecture Repository
meryl_0~20150903+r2013-3_i386.deb 0~20150903+r2013 i386 Ubuntu Universe
meryl - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5

Download

Type URL
Mirror archive.ubuntu.com
Binary Package meryl_0~20150903+r2013-3_amd64.deb
Source Package kmer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install meryl deb package:
    # sudo apt-get install meryl

Files

Path
/usr/bin/existDB
/usr/bin/kmer-mask
/usr/bin/mapMers
/usr/bin/mapMers-depth
/usr/bin/meryl
/usr/bin/positionDB
/usr/bin/simple
/usr/share/doc/meryl/README.meryl.gz
/usr/share/doc/meryl/changelog.Debian.gz
/usr/share/doc/meryl/copyright
/usr/share/man/man1/existDB.1.gz
/usr/share/man/man1/kmer-mask.1.gz
/usr/share/man/man1/mapMers-depth.1.gz
/usr/share/man/man1/mapMers.1.gz
/usr/share/man/man1/meryl.1.gz
/usr/share/man/man1/positionDB.1.gz
/usr/share/man/man1/simple.1.gz

Changelog

2016-12-03 - Afif Elghraoui <afif@debian.org>
kmer (0~20150903+r2013-3) unstable; urgency=medium
* Rename source package to match upstream name and primary binary package
* New binary package: atac
* Drop unused packaging file for libkmer
* libkmer-dev, libmeryl-dev:
- reorganize header files and static libraries
* Remove obsolete README.Debian
* kmer: don't use Metapackages section
2016-11-28 - Afif Elghraoui <afif@debian.org>
kmer-tools (0~20150903+r2013-2) unstable; urgency=low
[ Afif Elghraoui ]
* Fix source URL in debian/copyright.
[ Andreas Tille ]
* Provide fake watch file to keep QA tools silent about no watch information
* debhelper 10
* cme fix dpkg-control
* hardening=+all
2016-01-02 - Afif Elghraoui <afif@ghraoui.name>
kmer-tools (0~20150903+r2013-1) unstable; urgency=low
* Simplify get-orig-source script
* Imported Upstream version 0~20150903+r2013
* Clean up source package: move meryl manpages to a subdirectory of debian/
* New binary packages:
- leaff
- sim4db
* Drop build-dependency on libbz2-dev
* Drop kazlib quilt patches
* Fix section/architecture of the kmer metapackage
* Set Vcs-Browser to point to cgit
* Don't install other READMEs to metapackage docs
* Update d/copyright
* Update README.source
- document situation with bundled kazlib
- document reason for monolithic source package
* Make the build system more flexible to hopefully fix build on kFreeBSD
* Add README.Debian to let users know some components aren't yet packaged
* Add comment for why we can't use dh --parallel
2015-05-01 - Afif Elghraoui <afif@ghraoui.name>
kmer-tools (0~20150520+2004-1) unstable; urgency=low
* Initial release (Closes: #784863)

See Also

Package Description
mesa-opencl-icd_18.0.0~rc5-1ubuntu1_amd64.deb free implementation of the OpenCL API -- ICD runtime
mesa-utils-extra_8.4.0-1_amd64.deb Miscellaneous Mesa utilies (opengles, egl)
mesa-utils_8.4.0-1_amd64.deb Miscellaneous Mesa GL utilities
mesa-va-drivers_18.0.0~rc5-1ubuntu1_amd64.deb Mesa VA-API video acceleration drivers
mesa-vulkan-drivers_18.0.0~rc5-1ubuntu1_amd64.deb Mesa Vulkan graphics drivers
meshio-tools_1.11.7-1_all.deb command-line tools for meshio
meshlab_1.3.2+dfsg1-4_amd64.deb System for processing and editing triangular meshes
meshs3d_0.2.2-14build1_amd64.deb OLSR/B.A.T.M.A.N. topology visualizer for s3d
meson_0.45.1-2_all.deb high-productivity build system
metacam_1.2-9_amd64.deb extract EXIF information from digital camera files
metacity-common_3.28.0-1_all.deb shared files for the Metacity window manager
metacity-themes_1.0.12_all.deb Themes for the Gtk2 metacity window manager
metacity_3.28.0-1_amd64.deb lightweight GTK+ window manager
metainit_0.0.5_all.deb Generates init scripts
metamonger_0.20150503-1.1_all.deb Save, diff, and restore filesystem metadata
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