mash_2.0-2_amd64.deb


Advertisement

Description

mash - fast genome and metagenome distance estimation using MinHash

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package filename mash_2.0-2_amd64.deb
Package name mash
Package version 2.0
Package release 2
Package architecture amd64
Package type deb
Category universe/science
Homepage https://mash.readthedocs.io
License -
Maintainer Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Download size 140.12 KB
Installed size 410.00 KB
Mash uses MinHash locality-sensitive hashing to reduce large biosequences to
a representative sketch and rapidly estimate pairwise distances between
genomes or metagenomes. Mash sketch databases effectively delineate known
species boundaries, allow construction of approximate phylogenies, and can be
searched in seconds using assembled genomes or raw sequencing runs from
Illumina, Pacific Biosciences, and Oxford Nanopore.
For metagenomics, Mash scales to thousands of samples and can replicate Human
Microbiome Project and Global Ocean Survey results in a fraction of the time.

Alternatives

Package Version Architecture Repository
mash_2.0-2_i386.deb 2.0 i386 Ubuntu Universe
mash - - -

Requires

Name Value
libc6 >= 2.14
libcapnp-0.6.1 -
libgcc1 >= 1:3.0
libgsl23 -
libgslcblas0 -
libstdc++6 >= 5.2
zlib1g >= 1:1.1.4

Download

Type URL
Mirror archive.ubuntu.com
Binary Package mash_2.0-2_amd64.deb
Source Package mash

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mash deb package:
    # sudo apt-get install mash

Files

Path
/usr/bin/mash
/usr/share/doc/mash/changelog.Debian.gz
/usr/share/doc/mash/copyright
/usr/share/man/man1/mash-dist.1.gz
/usr/share/man/man1/mash-info.1.gz
/usr/share/man/man1/mash-paste.1.gz
/usr/share/man/man1/mash-screen.1.gz
/usr/share/man/man1/mash-sketch.1.gz
/usr/share/man/man1/mash.1.gz

Changelog

2017-10-01 - Sascha Steinbiss <satta@debian.org>
mash (2.0-2) unstable; urgency=medium
* Specify required version of capnproto to avoid building with
problematic version (e.g. on sparc64).
2017-10-01 - Sascha Steinbiss <satta@debian.org>
mash (2.0-1) unstable; urgency=medium
* New upstream release.
* Refresh patches.
* Add new manpage for 'mash screen' subcommand.
* Bump Standards-Version.
2017-05-24 - Sascha Steinbiss <satta@debian.org>
mash (1.1.1-2) unstable; urgency=medium
* Fix parallel building FTBFS. Thanks to Adrian Bunk for the patch.
Closes: #863208
2016-08-27 - Sascha Steinbiss <satta@debian.org>
mash (1.1.1-1) unstable; urgency=medium
* New upstream release.
2016-07-22 - Sascha Steinbiss <satta@debian.org>
mash (1.1-3) unstable; urgency=medium
* Link shared external libcapnp and libkj.
This fixes an FTBFS on kfreebsd-amd64 (Closes: #832068)
Thanks to Aaron M. Ucko for the hint.
2016-07-21 - Sascha Steinbiss <satta@debian.org>
mash (1.1-2) unstable; urgency=medium
* Drop memcpy wrapper to allow building on more platforms.
2016-07-19 - Sascha Steinbiss <satta@debian.org>
mash (1.1-1) unstable; urgency=medium
* Initial release (Closes: #831781)

See Also

Package Description
maskprocessor_0.73-2_amd64.deb high-performance word generator with a per-position configurable charset
mason_1.0.0-12.3_all.deb Interactively creates a Linux packet filtering firewall
masqmail_0.3.4-1build1_amd64.deb mail transport agent for intermittently connected hosts
masscan_1.0.3-104-g676635d~ds0-1_amd64.deb TCP port scanner
massif-visualizer_0.7.0-1_amd64.deb Tool for visualizing memory usage recorded by Valgrind Massif
massxpert-data_4.1.0-1_all.deb transitional package
massxpert-doc_4.1.0-1_all.deb transitional package
massxpert_4.1.0-1_all.deb transitional package
mat_0.6.1-4_all.deb Metadata anonymisation toolkit
matanza_0.13+ds1-6_amd64.deb Space ascii war game
matchbox-common_0.9.1-6_all.deb common files for Matchbox Project applications
matchbox-desktop_2.0-5_amd64.deb desktop application launcher for resource-limited systems
matchbox-keyboard-im_0.1+svn20080916-11_amd64.deb GTK+ input module for on-screen keyboard
matchbox-keyboard_0.1+svn20080916-11_amd64.deb on-screen keyboard
matchbox-panel-manager_0.1-7_amd64.deb panel manager for matchbox-panel
Advertisement
Advertisement