embassy-domalign_0.1.660-2_amd64.deb


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Description

embassy-domalign - Extra EMBOSS commands for protein domain alignment

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package name embassy-domalign
Package version 0.1.660
Package release 2
Package architecture amd64
Package type deb
Installed size 601 B
Download size 66.65 KB
Official Mirror archive.ubuntu.com
The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
a work in progress.
Applications in the current domalign release are allversusall (sequence
similarity data from all-versus-all comparison), domainalign (generates
alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file
to identify representative structures) and seqalign (extend alignments (DAF
file) with sequences (DHF file)).

Alternatives

Package Version Architecture Repository
embassy-domalign_0.1.660-2_i386.deb 0.1.660 i386 Ubuntu Universe
embassy-domalign - - -

Requires

Name Value
emboss-lib << 6.6.1~
emboss-lib >= 6.6.0-1~
libc6 >= 2.4
libx11-6 -

Download

Type URL
Binary Package embassy-domalign_0.1.660-2_amd64.deb
Source Package embassy-domalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install embassy-domalign deb package:
    # sudo apt-get install embassy-domalign

Files

Path
/usr/bin/allversusall
/usr/bin/domainalign
/usr/bin/domainrep
/usr/bin/seqalign
/usr/share/EMBOSS/acd/allversusall.acd
/usr/share/EMBOSS/acd/domainalign.acd
/usr/share/EMBOSS/acd/domainrep.acd
/usr/share/EMBOSS/acd/seqalign.acd
/usr/share/EMBOSS/doc/html/embassy/domalign/allversusall.html
/usr/share/EMBOSS/doc/html/embassy/domalign/domainalign.html
/usr/share/EMBOSS/doc/html/embassy/domalign/domainrep.html
/usr/share/EMBOSS/doc/html/embassy/domalign/index.html
/usr/share/EMBOSS/doc/html/embassy/domalign/seqalign.html
/usr/share/EMBOSS/doc/programs/text/allversusall.txt
/usr/share/EMBOSS/doc/programs/text/domainalign.txt
/usr/share/EMBOSS/doc/programs/text/domainrep.txt
/usr/share/EMBOSS/doc/programs/text/seqalign.txt
/usr/share/doc/embassy-domalign/changelog.Debian.gz
/usr/share/doc/embassy-domalign/copyright
/usr/share/lintian/overrides/embassy-domalign
/usr/share/man/man1/allversusall.1e.gz
/usr/share/man/man1/domainalign.1e.gz
/usr/share/man/man1/domainrep.1e.gz
/usr/share/man/man1/seqalign.1e.gz

Changelog

2017-11-07 - Andreas Tille <tille@debian.org>
embassy-domalign (0.1.660-2) unstable; urgency=medium
* Moved packaging from SVN to Git
* Standards-Version: 4.1.1
* Fix Build-Depends: libgd2-xpm-dev -> libgd-dev
Closes: #880768
* Lintian-override to accept RPATH definition
2016-12-02 - Andreas Tille <tille@debian.org>
embassy-domalign (0.1.660-1) unstable; urgency=medium
* New upstream version (its actually no new code but only the version
number has changed)
* debhelper 10
* cme fix dpkg-control
* d/watch: version=4
* Build-Depends: default-libmysqlclient-dev
Closes: #845836
* hardening=+all
* delete unused lintian-override
2013-09-12 - Andreas Tille <tille@debian.org>
embassy-domalign (0.1.650-1) unstable; urgency=low
* New upstream version
* debian/control:
- cme fix dpkg-control
- Bumped versioned depends from emboss-lib
- anonscm in VCS fields
2012-05-15 - Andreas Tille <tille@debian.org>
embassy-domalign (0.1.0+20110714-1) unstable; urgency=low
* New upstream version (upstream has applied quilt patch)
Closes: #661426
* debian/control: 
- Standards-Version: 3.9.3 (no changes needed)
- Adapted versioned (build-)depends to latest emboss version
* debian/rules: short dh
* debhelper 9 (control+compat)
* debian/source/format: 3.0 (quilt)
* debian/copyright: DEP5 fixes
2011-05-12 - Charles Plessy <plessy@debian.org>
embassy-domalign (0.1.0+20100721-3) unstable; urgency=low
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
(debian/rules) Closes: #625189, LP: #771115.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
2010-09-22 - Charles Plessy <plessy@debian.org>
embassy-domalign (0.1.0+20100721-2) unstable; urgency=low
* Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
lower than 6.3.2, because backwards compatibility is sometimes
broken (debian/control, debian/rules).
* Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
libraries (debian/rules, debian/embassy-domalign.lintian-overrides).
* Use quilt since simple-patchsys is deprecated (debian/control,
debian/rules, debian/patches/series).
* Refreshed debian/copyright to test the latest DEP-5 format.
2010-08-11 - Charles Plessy <plessy@debian.org>
embassy-domalign (0.1.0+20100721-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
* Build-Depends on emboss 6.3.1 (debian/control, debian/rules,
closes: #591116).
* Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
* Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
* Patched src/Makefile.am to use Debian's libexpat, using CDBS
(debian/patches/enable-esystemlibs.patch, debian/rules, debian/control).
2009-07-18 - Charles Plessy <plessy@debian.org>
embassy-domalign (0.1.0+20100115-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
* debian/control:
- Build against EMBOSS 6.2 (Closes: #587113).
- Checked conformance with Policy 3.8.4 (no changes needed).
* debian/*manpages* refreshed.
-- Charles Plessy <plessy@debian.org>  Sat, 26 Jun 2010 18:51:56 +0900
embassy-domalign (0.1.0+20090715-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
* debian/control:
- Build against EMBOSS 6.1
- Checked conformance with Policy 3.8.2 (no changes needed).
* debian/watch: mangle Debian version to ignore the timestamp.
* Refreshed and experimeted on debian/copyright.
* debian/*manpages* refreshed and moved to section 1e.

See Also

Package Description
embassy-domsearch_0.1.660-2_amd64.deb Extra EMBOSS commands to search for protein domains
ember-media_0.7.2.1-1_all.deb 3D client framework for the WorldForge project -- media files
ember_0.7.2+dfsg-1build2_amd64.deb 3D client framework for the WorldForge project
emboss-data_6.6.0+dfsg-6build1_all.deb data files for the EMBOSS package
emboss-doc_6.6.0+dfsg-6build1_all.deb documentation for EMBOSS
emboss-explorer_2.2.0-9_all.deb web-based GUI to EMBOSS
emboss-lib_6.6.0+dfsg-6build1_amd64.deb EMBOSS Libraries
emboss-test_6.6.0+dfsg-6build1_all.deb test files for the EMBOSS package
emboss_6.6.0+dfsg-6build1_amd64.deb European molecular biology open software suite
emdebian-archive-keyring_2.2_all.deb GnuPG archive keys for the emdebian repository
emelfm2-svg-icons_20100219-3_all.deb icon SVG files from emelfm2 project
emelfm2_0.4.1-0ubuntu4_amd64.deb file manager for X/gtk
emma_0.6-5_all.deb extendable MySQL managing assistant
emms_4.4-1_amd64.deb Emacs MultiMedia System
empathy-common_3.25.90+really3.12.14-0ubuntu1_all.deb GNOME multi-protocol chat and call client (common files)
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