ecopcr_0.5.0+dfsg-1_amd64.deb


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Description

ecopcr - estimate PCR barcode primers quality

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package name ecopcr
Package version 0.5.0+dfsg
Package release 1
Package architecture amd64
Package type deb
Installed size 216 B
Download size 51.64 KB
Official Mirror archive.ubuntu.com
DNA barcoding is a tool for characterizing the species origin using a
short sequence from a standard position and agreed upon position in the
genome. To be used as a DNA barcode, a genome locus should vary among
individuals of the same species only to a minor degree and it should
vary among species very quickly. From a practical point of view, a
barcode locus should be flanked by two conserved regions to design PCR
primers. Several manually discovered barcode loci like COI, rbcL, 18S,
16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
function has been described to measure their quality in terms of
universality (barcode coverage, Bc ) or in terms of taxonomical
discrimination capacity (barcode specificity, Bs ).
ecoPCR is an electronic PCR software developed by LECA and
Helix-Project. It helps to estimate Barcode primers quality. In
conjunction with OBITools you can postprocess ecoPCR output to compute
barcode coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software

Alternatives

Package Version Architecture Repository
ecopcr_0.5.0+dfsg-1_i386.deb 0.5.0+dfsg i386 Ubuntu Universe
ecopcr - - -

Requires

Name Value
libc6 >= 2.14
python3-reportlab -
python3:any -
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package ecopcr_0.5.0+dfsg-1_amd64.deb
Source Package ecopcr

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ecopcr deb package:
    # sudo apt-get install ecopcr

Files

Path
/usr/bin/ecoPCR
/usr/bin/ecoPCRFilter
/usr/bin/ecoPCRFormat
/usr/bin/ecoSort
/usr/bin/ecofind
/usr/bin/ecogrep
/usr/bin/ecoisundertaxon
/usr/share/doc/ecopcr/changelog.Debian.gz
/usr/share/doc/ecopcr/copyright
/usr/share/man/man1/ecoPCR.1.gz
/usr/share/man/man1/ecoPCRFormat.1.gz
/usr/share/man/man1/ecofind.1.gz
/usr/share/man/man1/ecogrep.1.gz
/usr/share/man/man1/ecoisundertaxon.1.gz

Changelog

2017-01-11 - Andreas Tille <tille@debian.org>
ecopcr (0.5.0+dfsg-1) unstable; urgency=medium
* Fix copyright
* Adapt watch file to freshly created tags
* cme fix dpkg-control
* debhelper 10
* hardening=+all
* fix some spelling issues
2015-06-25 - Andreas Tille <tille@debian.org>
ecopcr (0.5.0-1) unstable; urgency=low
* Initial release (Closes: #789921)

See Also

Package Description
ecosconfig-imx_200910-0ubuntu5_amd64.deb eCos configuration tool for imx SoC's RedBoot
ecryptfs-utils_111-0ubuntu5_amd64.deb ecryptfs cryptographic filesystem (utilities)
ed2k-hash_0.3.3+deb2-3_amd64.deb tool for generating ed2k-links
edac-utils_0.18-1build1_amd64.deb report kernel-detected PCI and ECC RAM errors
edb-debugger-plugins_0.9.21-3_amd64.deb edb plugins
edb-debugger_0.9.21-3_amd64.deb cross platform x86/x86-64 debugger
edb_1.31-3_all.deb database program for GNU Emacs
edbrowse_3.7.2-1_amd64.deb /bin/ed-alike webbrowser written in C
edenmath.app_1.1.1a-7.1build2_amd64.deb Scientific calculator for GNUstep
edfbrowser_1.62+dfsg-1_amd64.deb viewer for biosignal storage files such as bdf and edf
edgar-data_1.23-1build1_all.deb 2D platform game with a persistent world (data files)
edgar_1.23-1build1_amd64.deb 2D platform game with a persistent world
edgy-community-wallpapers_0.8_all.deb Edgy Community Wallpapers
edgy-session-splashes_0.5-0ubuntu2_all.deb Edgy Session Splashes
edgy-wallpapers_0.9-0ubuntu2_all.deb Edgy Wallpapers
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