dotter_4.44.1+dfsg-2build1_amd64.deb


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Description

dotter - detailed comparison of two genomic sequences

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package name dotter
Package version 4.44.1+dfsg
Package release 2build1
Package architecture amd64
Package type deb
Installed size 308 B
Download size 108.46 KB
Official Mirror archive.ubuntu.com
Dotter is a graphical dot-matrix program for detailed comparison of two
sequences.
* Every residue in one sequence is compared to every residue in the
other, and a matrix of scores is calculated.
* One sequence is plotted on the x-axis and the other on the y-axis.
* Noise is filtered out so that alignments appear as diagonal lines.
* Pairwise scores are averaged over a sliding window to make the score
matrix more intelligible.
* The averaged score matrix forms a three-dimensional landscape,
with the two sequences in two dimensions and the height of the
peaks in the third. This landscape is projected onto two
dimensions using a grey-scale image - the darker grey of a peak,
the higher the score is.
* The contrast and threshold of the grey-scale image can be adjusted
interactively, without having to recalculate the score matrix.
* An Alignment Tool is provided to examine the sequence alignment that
the grey-scale image represents.
* Known high-scoring pairs can be loaded from a GFF file and overlaid
onto the plot.
* Gene models can be loaded from GFF and displayed alongside the
relevant axis.
* Compare a sequence against itself to find internal repeats.
* Find overlaps between multiple sequences by making a dot-plot of all
sequences versus themselves.
* Run Dotter in batch mode to create large, time-consuming dot-plots as
a background process.

Alternatives

Package Version Architecture Repository
dotter_4.44.1+dfsg-2build1_i386.deb 4.44.1+dfsg i386 Ubuntu Universe
dotter - - -

Requires

Name Value
libc6 >= 2.14
libcairo2 >= 1.2.4
libcurl4 >= 7.16.2
libgbtools0 -
libgcc1 >= 1:3.0
libglib2.0-0 >= 2.22.0
libgtk2.0-0 >= 2.12.0
libpango-1.0-0 >= 1.14.0
libpangocairo-1.0-0 >= 1.14.0
libstdc++6 >= 5.2

Provides

Name Value
acedb-other-dotter -

Conflicts

Name Value
acedb-other-dotter << 4.9.39+dfsg.02-2

Replaces

Name Value
acedb-other-dotter << 4.9.39+dfsg.02-2

Download

Type URL
Binary Package dotter_4.44.1+dfsg-2build1_amd64.deb
Source Package seqtools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install dotter deb package:
    # sudo apt-get install dotter

Files

Path
/usr/bin/dotter
/usr/share/doc/dotter/changelog.Debian.gz
/usr/share/doc/dotter/copyright
/usr/share/man/man1/dotter.1.gz

Changelog

2018-02-28 - Steve Langasek <steve.langasek@ubuntu.com>
seqtools (4.44.1+dfsg-2build1) bionic; urgency=medium
* No-change rebuild against libcurl4
2018-01-22 - Andreas Tille <tille@debian.org>
seqtools (4.44.1+dfsg-2) unstable; urgency=medium
* Versioned Conflicts+Replaces to enable installing old transitional packages
Closes: #887616
* Standards-Version: 4.1.3
* debhelper 11
2017-12-01 - Andreas Tille <tille@debian.org>
seqtools (4.44.1+dfsg-1) unstable; urgency=medium
* Initial release (Closes: #879840)

See Also

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doublecmd-gtk_0.8.2-1_amd64.deb twin-panel (commander-style) file manager (GTK2)
doublecmd-help-en_0.8.0-1_all.deb Documentation for Double Commander (English)
doublecmd-help-ru_0.8.0-1_all.deb Documentation for Double Commander (Russian)
doublecmd-help-uk_0.8.0-1_all.deb Documentation for Double Commander (Ukrainian)
doublecmd-plugins_0.8.2-1_amd64.deb twin-panel (commander-style) file manager (plugins)
doublecmd-qt_0.8.2-1_amd64.deb twin-panel (commander-style) file manager (Qt5)
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dovecot-antispam_2.0+20170109-1build2_amd64.deb Dovecot plugins for training spam filters
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dovecot-metadata-plugin_14+20131027-0ubuntu2_amd64.deb Experimental IMAP METADATA Extension for Dovecot
dovecot-mysql_2.2.33.2-1ubuntu4_amd64.deb secure POP3/IMAP server - MySQL support
dovecot-pgsql_2.2.33.2-1ubuntu4_amd64.deb secure POP3/IMAP server - PostgreSQL support
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