dnaclust_3-5_amd64.deb


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Description

dnaclust - tool for clustering millions of short DNA sequences

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package name dnaclust
Package version 3
Package release 5
Package architecture amd64
Package type deb
Installed size 324 B
Download size 87.88 KB
Official Mirror archive.ubuntu.com
dnaclust is a tool for clustering large number of short DNA sequences.
The clusters are created in such a way that the "radius" of each
clusters is no more than the specified threshold.
The input sequences to be clustered should be in Fasta format. The id
of each sequence is based on the first word of the seqeunce in the Fasta
format. The first word is the prefix of the header up to the first
occurrence of white space characters in the header.

Alternatives

Package Version Architecture Repository
dnaclust_3-5_i386.deb 3 i386 Ubuntu Universe
dnaclust - - -

Requires

Name Value
libboost-program-options1.65.1 -
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Binary Package dnaclust_3-5_amd64.deb
Source Package dnaclust

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install dnaclust deb package:
    # sudo apt-get install dnaclust

Files

Path
/usr/bin/dnaclust
/usr/bin/dnaclust-abun
/usr/bin/dnaclust-ref
/usr/bin/find-large-clusters
/usr/bin/generate_test_clusters
/usr/bin/star-align
/usr/lib/dnaclust/fastaselect
/usr/lib/dnaclust/fastasort
/usr/share/doc/dnaclust/changelog.Debian.gz
/usr/share/doc/dnaclust/copyright
/usr/share/man/man1/dnaclust.1.gz

Changelog

2017-09-24 - Andreas Tille <tille@debian.org>
dnaclust (3-5) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added references to
OMICtools and RRID
[ Andreas Tille ]
* debhelper 10
* Do not parse d/changelog
* Build-Depends: rename
Closes: #876602
* Standards-Version: 4.1.0 (no changes needed)
* Spelling
2016-07-17 - Sascha Steinbiss <satta@debian.org>
dnaclust (3-4) unstable; urgency=medium
* Team upload.
* Enable full hardening.
* Use secure Vcs-Git.
* Bump Standards-Version.
* Fix building with GCC 6.
Closes: #831193.
2015-03-27 - Andreas Tille <tille@debian.org>
dnaclust (3-3) unstable; urgency=medium
* Fix Vcs fields
* Moved debian/upstream to debian/upstream/metadata
2014-02-11 - Andreas Tille <tille@debian.org>
dnaclust (3-2) unstable; urgency=medium
* Move /usr/bin/fastasor to /usr/lib/dnaclust/fastasor to avoid
name space conflict with exonerate.
Closes: #737913
2014-02-01 - Andreas Tille <tille@debian.org>
dnaclust (3-1) unstable; urgency=low
* Initial release (Closes: #737327)

See Also

Package Description
dnet-common_2.65_all.deb Base package for Linux DECnet
dnet-progs_2.65_amd64.deb DECnet user programs and daemons
dns-browse_1.9-8_all.deb Front-ends to DNS search
dns-flood-detector_1.20-4_amd64.deb detect abusive usage levels on high traffic nameservers
dns2tcp_0.5.2-1.1build1_amd64.deb TCP over DNS tunnel client and server
dns323-firmware-tools_0.7.3-1_all.deb build and manipulate firmware images for a range of NAS devices
dnscrypt-proxy-plugins_1.9.5-1build1_amd64.deb Plugins for dnscrypt-proxy
dnscrypt-proxy_1.9.5-1build1_amd64.deb Tool for securing communications between a client and a DNS resolver
dnsdiag_1.6.3-1_all.deb DNS request auditing toolset
dnsdist_1.2.1-1build1_amd64.deb DNS loadbalancer
dnshistory_1.3-2build3_amd64.deb Translating and storing of IP addresses from log files
dnsmasq-base-lua_2.79-1_amd64.deb Small caching DNS proxy and DHCP/TFTP server
dnsmasq_2.79-1_all.deb Small caching DNS proxy and DHCP/TFTP server
dnsproxy_1.16-0.1build2_amd64.deb proxy for DNS queries
dnsrecon_0.8.12-1_all.deb Powerful DNS enumeration script
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