disulfinder_1.2.11-7_amd64.deb


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Description

disulfinder - cysteines disulfide bonding state and connectivity predictor

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package name disulfinder
Package version 1.2.11
Package release 7
Package architecture amd64
Package type deb
Installed size 701 B
Download size 242.01 KB
Official Mirror archive.ubuntu.com
'disulfinder' is for predicting the disulfide bonding state of cysteines
and their disulfide connectivity starting from sequence alone. Disulfide
bridges play a major role in the stabilization of the folding process for
several proteins. Prediction of disulfide bridges from sequence alone is
therefore useful for the study of structural and functional properties
of specific proteins. In addition, knowledge about the disulfide bonding
state of cysteines may help the experimental structure determination
process and may be useful in other genomic annotation tasks.
'disulfinder' predicts disulfide patterns in two computational stages:
(1) the disulfide bonding state of each cysteine is predicted by a
BRNN-SVM binary classifier; (2) cysteines that are known to participate
in the formation of bridges are paired by a Recursive Neural Network
to obtain a connectivity pattern.

Alternatives

Package Version Architecture Repository
disulfinder_1.2.11-7_i386.deb 1.2.11 i386 Ubuntu Universe
disulfinder - - -

Requires

Name Value
disulfinder-data -
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Binary Package disulfinder_1.2.11-7_amd64.deb
Source Package disulfinder

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install disulfinder deb package:
    # sudo apt-get install disulfinder

Files

Path
/usr/bin/disulfinder
/usr/share/doc/disulfinder/README.test
/usr/share/doc/disulfinder/changelog.Debian.gz
/usr/share/doc/disulfinder/copyright
/usr/share/doc/disulfinder/installation-test
/usr/share/doc/disulfinder/metadata
/usr/share/doc/disulfinder/examples/res_id_41483.blastPsiMatTmb.gz
/usr/share/doc/disulfinder/examples/res_id_41483.expected_result
/usr/share/man/man1/disulfinder.1.gz

Changelog

2017-08-27 - Andreas Tille <tille@debian.org>
disulfinder (1.2.11-7) unstable; urgency=medium
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.0 (no changes needed)
* Avoid duplicated definition of guard macro (Thanks for the tip to
Christian Seiler <christian@iwakd.de>)
Closes: #853375
2016-06-26 - Tatiana Malygina <merlettaia@gmail.com>
disulfinder (1.2.11-6) unstable; urgency=medium
* Team upload.
[Tatiana Malygina]
* fix in install override in debian/rules
* add harderning
* add simple testsuite
* cme fix dpkg-control
* add README.test
[Gert Wollny] 
* d/p/gcc-6: Add patch to fix compilation with gcc-6, Closes: #811876
* d/rules: enable parallel builds 
2016-01-08 - Andreas Tille <tille@debian.org>
disulfinder (1.2.11-5) unstable; urgency=medium
* moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
2014-09-07 - Laszlo Kajan <lkajan@debian.org>
disulfinder (1.2.11-4) unstable; urgency=medium
* Included patch to solve 'FTBFS with clang' (Closes: #741559)
* Patched out 'unrecognized escape sequences'
2013-11-17 - Andreas Tille <tille@debian.org>
disulfinder (1.2.11-3) unstable; urgency=low
* debian/upstream: Valid BibTeX syntax in author strings
* debian/control:
- cme fix dpkg-control
- Priority: s/extra/optional/
- canonical Vcs URLs
- debhelper 9
* debian/copyright: DEP5
* debian/patches/hardening.patch: Propagate hardening options
* debian/rules: use dh consequently
* README.Debian: references are now in debian/upstream - install this
instead into doc directory
2011-08-31 - Laszlo Kajan <lkajan@rostlab.org>
disulfinder (1.2.11-2) unstable; urgency=low
* added mkdir debian/disulfinder-data/usr/share/disulfinder/ to
debian/rules before moving Models to disulfinder-data package to
resolve building issue on certain architectures (Closes: #639571)
2011-08-26 - Laszlo Kajan <lkajan@rostlab.org>
disulfinder (1.2.11-1) unstable; urgency=low
* New upstream release
2011-08-18 - Laszlo Kajan <lkajan@rostlab.org>
disulfinder (1.2.10-1) unstable; urgency=low
* New upstream release
* The new upstream contains a rewritten version of require.h: the new
require.h is no longer based on any code with restricted license,
it is released under the GPL (see source)
[Steffen]
* moved to dh7
* added data package
2011-07-24 - Laszlo Kajan <lkajan@rostlab.org>
disulfinder (1.2.9-2) UNRELEASED; urgency=low
[Steffen]
* Added build-arch/-indep targets to help lintian
2011-07-09 - Laszlo Kajan <lkajan@rostlab.org>
disulfinder (1.2.9-1) unstable; urgency=low
* Initial release (Closes: #634177)

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