discosnp_1.2.6-2_amd64.deb


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Description

discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of reads

Property Value
Distribution Ubuntu 18.04 LTS (Bionic Beaver)
Repository Ubuntu Universe amd64
Package name discosnp
Package version 1.2.6
Package release 2
Package architecture amd64
Package type deb
Installed size 336 B
Download size 143.89 KB
Official Mirror archive.ubuntu.com
Software discoSnp is designed for discovering Single Nucleotide
Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation
Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two,
or more. Note also that no other data as reference genome or annotations
are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs
from read sets. A second module, kissreads, enhance the kissnp2 results by
computing per read set  and for each found SNP:
1) its mean read coverage
2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.

Alternatives

Package Version Architecture Repository
discosnp_1.2.6-2_i386.deb 1.2.6 i386 Ubuntu Universe
discosnp - - -

Requires

Name Value
bc -
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2
python -
zlib1g >= 1:1.2.3.4

Download

Type URL
Binary Package discosnp_1.2.6-2_amd64.deb
Source Package discosnp

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install discosnp deb package:
    # sudo apt-get install discosnp

Files

Path
/usr/bin/discoSnp_to_csv
/usr/bin/discoSnp_to_genotypes
/usr/bin/kissnp2
/usr/bin/kissreads
/usr/share/doc/discosnp/README.Debian
/usr/share/doc/discosnp/README.txt.gz
/usr/share/doc/discosnp/changelog.Debian.gz
/usr/share/doc/discosnp/copyright
/usr/share/doc/discosnp/examples/data_sample/reads_sequence1.fasta.gz
/usr/share/doc/discosnp/examples/data_sample/reads_sequence2.fasta.gz
/usr/share/man/man1/kissnp2.1.gz
/usr/share/man/man1/kissreads.1.gz

Changelog

2017-11-14 - Andreas Tille <tille@debian.org>
discosnp (1.2.6-2) unstable; urgency=medium
* Secure URI in watch file
* Mention that program is superseded by DiscoSnp++
* Moved packaging from SVN to Git
* debhelper 10
* d/rules: do not parse d/changelog
* Standards-Version: 4.1.1
* DEP5
* Remove unused lintian override
2014-11-21 - Olivier Sallou <osallou@debian.org>
discosnp (1.2.6-1) unstable; urgency=medium
* New upstream release 
2014-10-11 - Andreas Tille <tille@debian.org>
discosnp (1.2.5-1) unstable; urgency=medium
* New upstream release
* cme fix dpkg-control
* Fix some DEP3 lintian issues
2014-08-18 - Olivier Sallou <osallou@debian.org>
discosnp (1.2.3-1) unstable; urgency=medium
* New upstream release
2014-05-29 - Olivier Sallou <osallou@debian.org>
discosnp (1.2.2-1) unstable; urgency=medium
* New upstream release 
2014-04-09 - Olivier Sallou <osallou@debian.org>
discosnp (1.2.1-1) unstable; urgency=low
* New upstream release 
2014-02-06 - Olivier Sallou <osallou@debian.org>
discosnp (1.0.1-3) unstable; urgency=low
* d/rules: FTBS fix help2man command
2014-02-06 - Olivier Sallou <osallou@debian.org>
discosnp (1.0.1-2) unstable; urgency=low
* d/control: FTBS due to missing deps
2014-02-01 - Olivier Sallou <osallou@debian.org>
discosnp (1.0.1-1) unstable; urgency=low
* First debian package (Closes: #737098).

See Also

Package Description
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dish_1.19.1-1_all.deb diligence/distributed shell for parallel sysadmin
diskimage-builder-doc_2.11.0-0ubuntu1_all.deb image building tools for Openstack - doc
diskscan_0.20-1_amd64.deb scan storage media for bad or near failure sectors
disktype_9-6_amd64.deb detection of content format of a disk or disk image
dislocker_0.7.1-3build3_amd64.deb read/write encrypted BitLocker volumes
disorderfs_0.5.2-2_amd64.deb FUSE filesystem that introduces non-determinism
dispcalgui_3.5.0.0-1_amd64.deb Graphical user interface for the Argyll CMS
disper_0.3.1-2_all.deb display switcher for attaching/detaching displays easily
display-dhammapada_1.0-0.1build1_amd64.deb fortune-like collection of Buddhist sayings
dist_3.5-36.0001-3_all.deb Tools for developing, maintaining and distributing software
distcc-pump_3.1-6.3_amd64.deb pump mode for distcc a distributed compiler client and server
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