python-pbalign_0.3.0-1_all.deb


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Description

python-pbalign - map Pacific Biosciences reads to reference DNA sequences (Python2)

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name python-pbalign
Package version 0.3.0
Package release 1
Package architecture all
Package type deb
Installed size 225 B
Download size 36.32 KB
Official Mirror archive.ubuntu.com
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
pbalign is part of the SMRTAnalysis suite. This package provides the
Python library backend.

Alternatives

Package Version Architecture Repository
python-pbalign_0.3.0-1_all.deb 0.3.0 all Ubuntu Universe
python-pbalign - - -

Requires

Name Value
blasr >= 5.3+0
python-pbcommand -
python-pbcore -
python-pysam -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-pbalign_0.3.0-1_all.deb
Source Package pbalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-pbalign deb package:
    # sudo apt-get install python-pbalign

Files

Path
/usr/lib/python2.7/dist-packages/pbalign/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/bampostservice.py
/usr/lib/python2.7/dist-packages/pbalign/ccs.py
/usr/lib/python2.7/dist-packages/pbalign/filterservice.py
/usr/lib/python2.7/dist-packages/pbalign/options.py
/usr/lib/python2.7/dist-packages/pbalign/pbalignfiles.py
/usr/lib/python2.7/dist-packages/pbalign/pbalignrunner.py
/usr/lib/python2.7/dist-packages/pbalign/service.py
/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info/entry_points.txt
/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info/not-zip-safe
/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/pbalign-0.3.0.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/pbalign/alignservice/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/align.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/blasr.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/bowtie.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/fastabasedalign.py
/usr/lib/python2.7/dist-packages/pbalign/alignservice/gmap.py
/usr/lib/python2.7/dist-packages/pbalign/tasks/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/tasks/consolidate_alignments.py
/usr/lib/python2.7/dist-packages/pbalign/tools/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/tools/createChemistryHeader.py
/usr/lib/python2.7/dist-packages/pbalign/tools/extractUnmappedSubreads.py
/usr/lib/python2.7/dist-packages/pbalign/tools/loadChemistry.py
/usr/lib/python2.7/dist-packages/pbalign/tools/mask_aligned_reads.py
/usr/lib/python2.7/dist-packages/pbalign/utils/RgnH5IO.py
/usr/lib/python2.7/dist-packages/pbalign/utils/__init__.py
/usr/lib/python2.7/dist-packages/pbalign/utils/fileutil.py
/usr/lib/python2.7/dist-packages/pbalign/utils/progutil.py
/usr/lib/python2.7/dist-packages/pbalign/utils/tempfileutil.py
/usr/share/doc/python-pbalign/changelog.Debian.gz
/usr/share/doc/python-pbalign/copyright

Changelog

See pbalign_0.3.0-1_all.deb changelog.

See Also

Package Description
python-pbbanana_15.8.24+dfsg-2_all.deb additional utilities for the pbsuite
python-pbcommand_0.5.3-1_all.deb common command-line interface for Pacific Biosciences analysis modules
python-pbconsensuscore_1.0.2-2build2_i386.deb algorithms for PacBio multiple sequence consensus -- Python 2
python-pbcore-doc_1.2.11+dfsg-1ubuntu1_all.deb Python library for processing PacBio data files (documentation)
python-pbcore_1.2.11+dfsg-1ubuntu1_all.deb Python library for processing PacBio data files
python-pbgenomicconsensus_2.1.0-1_all.deb Pacific Biosciences variant and consensus caller (Python 2)
python-pbh5tools-doc_0.8.0+dfsg-5build1_all.deb tools for manipulating HDF5 files produced by Pacific Biosciences (doc)
python-pbkdf2_1.3+20110613.git2a0fb15~ds0-3_all.deb Python RSA PKCS#5 v2.0 module (Python 2)
python-pbsuite-utils_15.8.24+dfsg-2_all.deb software for Pacific Biosciences sequencing data -- Python utilities
python-pcapy_0.10.8-1build1_i386.deb Python interface to the libpcap packet capture library
python-pcl-msgs_0.2.0-6_all.deb Python code for PCL-related Robot OS Messages
python-pcp_3.12.1_i386.deb Performance Co-Pilot Python PMAPI module
python-pcs_0.6+debian-0ubuntu3_i386.deb Packet Construction Set for Python
python-pdal_1.5.0+ds-2_i386.deb Point Data Abstraction Library - Python 2 extension
python-pdfkit_0.5.0-1_all.deb Python wrapper for wkhtmltopdf to convert HTML to PDF (Python 2)
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