python-freecontact_1.1-2build3_i386.deb


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Description

python-freecontact - fast protein contact predictor - binding for Python

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name python-freecontact
Package version 1.1
Package release 2build3
Package architecture i386
Package type deb
Installed size 160 B
Download size 78.77 KB
Official Mirror archive.ubuntu.com
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
This package contains the Python binding.

Alternatives

Package Version Architecture Repository
python-freecontact_1.1-2build3_amd64.deb 1.1 amd64 Ubuntu Universe
python-freecontact - - -

Requires

Name Value
libboost-python1.62.0 -
libc6 >= 2.4
libfreecontact0v5 -
libgcc1 >= 1:3.0
libstdc++6 >= 5
python << 2.8
python >= 2.7~
python:any << 2.8
python:any >= 2.7~

Download

Type URL
Binary Package python-freecontact_1.1-2build3_i386.deb
Source Package python-freecontact

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-freecontact deb package:
    # sudo apt-get install python-freecontact

Files

Path
/usr/lib/python2.7/dist-packages/freecontact.i386-linux-gnu.so
/usr/lib/python2.7/dist-packages/python_freecontact-1.1.egg-info
/usr/share/doc/python-freecontact/changelog.Debian.gz
/usr/share/doc/python-freecontact/copyright
/usr/share/doc/python-freecontact/examples/demo_1000.aln.gz

Changelog

2016-11-01 - Dimitri John Ledkov <xnox@ubuntu.com>
python-freecontact (1.1-2build3) zesty; urgency=high
* No change rebuild against boost1.62.
2016-08-04 - Matthias Klose <doko@ubuntu.com>
python-freecontact (1.1-2build2) yakkety; urgency=medium
* No-change rebuild for boost soname change.
2016-04-23 - Matthias Klose <doko@ubuntu.com>
python-freecontact (1.1-2build1) yakkety; urgency=medium
* No-change rebuild for boost soname change.
2015-08-21 - Andreas Tille <tille@debian.org>
python-freecontact (1.1-2) unstable; urgency=medium
* cme fix dpkg-control
* add myself to Uploaders
* Priority: optional
* DEP5 fix
* once libboost-python-dev will be provided for Python3 we could have
a python3-freecontact package and this is prepared but not activated
2013-07-17 - Laszlo Kajan <lkajan@debian.org>
python-freecontact (1.1-1) unstable; urgency=low
* Initial release (Closes: #723771).

See Also

Package Description
python-freenect_0.5.3-1_i386.deb library for accessing Kinect device -- Python bindings
python-freezegun_0.3.7-1_all.deb Python library to mock the datetime module in unit testing
python-freshen_0.2-2_all.deb acceptance testing framework for Python
python-frozen-flask_0.11-3_all.deb Freezes a Flask application into a set of static files
python-frozendict_0.5-1_all.deb immutable dictionary - Python 2.7
python-fs-browser_0.5.4-1_all.deb Python filesystem abstraction - Gtk browser
python-fs-plugin-django_0.5.4-1_all.deb Python filesystem abstraction - Django File Storage
python-fs-plugin-s3_0.5.4-1_all.deb Python filesystem abstraction - Amazon S3
python-fs-plugin-sftp_0.5.4-1_all.deb Python filesystem abstraction - SFTP access
python-fs-plugin-tahoe-lafs_0.5.4-1_all.deb Python filesystem abstraction - Tahoe-LAFS
python-fs-plugin-webdav_0.5.4-1_all.deb Python filesystem abstraction - WebDAV
python-fs_0.5.4-1_all.deb Python filesystem abstraction
python-fswrap_1.0.1-0.1_all.deb unified object oriented interface to file system objects
python-ftdi1_1.3-2build2_i386.deb Python module to control and program the FTDI USB controllers
python-fte_0.1.0-1_i386.deb encryption library to thwart deep packet inspection censorship
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