python-biotools_1.2.12-1_i386.deb


Advertisement

Description

python-biotools - Python bioinformatics utilities for high-throughput genomic sequencing

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name python-biotools
Package version 1.2.12
Package release 1
Package architecture i386
Package type deb
Installed size 115 B
Download size 24.55 KB
Official Mirror archive.ubuntu.com
This package contains utilities like
biotools.align - align sequences (hybrid between Needleman-Wunsch and
Smith-Waterman which is used to find the subsequence
within a larger sequence that best aligns to a reference)
biotools.annotation - create annotation files. The annotations can be used
to create a hierarchy among the annotations
biotools.BLAST - manage BLAST databases and interface with the BLAST+
standalone program available from NCBI.
biotools.clustal - interface to clustalw global (multiple nucleotide or
peptide sequence alignment)
biotools.complement - creates the complement of a sequence, which can then be
reversed
biotools.sequence - various tools to deal with sequences
biotools.translate - translate a nucleotide using the standard genetic code
This package contains the Python 2 module.

Alternatives

Package Version Architecture Repository
python-biotools_1.2.12-1_amd64.deb 1.2.12 amd64 Ubuntu Universe
python-biotools - - -

Requires

Name Value
clustalw -
ncbi-blast+ -
ncbi-blast+-legacy -
python-matplotlib -
python-numpy -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-biotools_1.2.12-1_i386.deb
Source Package python-biotools

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-biotools deb package:
    # sudo apt-get install python-biotools

Files

Path
/usr/lib/python2.7/dist-packages/biotools-1.2.12.egg-info
/usr/lib/python2.7/dist-packages/biotools/BLAST.py
/usr/lib/python2.7/dist-packages/biotools/__init__.py
/usr/lib/python2.7/dist-packages/biotools/align.py
/usr/lib/python2.7/dist-packages/biotools/annotation.py
/usr/lib/python2.7/dist-packages/biotools/clustal.py
/usr/lib/python2.7/dist-packages/biotools/complement.py
/usr/lib/python2.7/dist-packages/biotools/sequence.py
/usr/lib/python2.7/dist-packages/biotools/translate.py
/usr/lib/python2.7/dist-packages/biotools/IO/__init__.py
/usr/lib/python2.7/dist-packages/biotools/IO/clustal.py
/usr/lib/python2.7/dist-packages/biotools/IO/fasta.py
/usr/lib/python2.7/dist-packages/biotools/IO/fastq.py
/usr/lib/python2.7/dist-packages/biotools/IO/gff.py
/usr/lib/python2.7/dist-packages/biotools/IO/manager.py
/usr/lib/python2.7/dist-packages/biotools/IO/phylip.py
/usr/lib/python2.7/dist-packages/biotools/analysis/__init__.py
/usr/lib/python2.7/dist-packages/biotools/analysis/cluster.py
/usr/lib/python2.7/dist-packages/biotools/analysis/loaddata.py
/usr/lib/python2.7/dist-packages/biotools/analysis/options.py
/usr/lib/python2.7/dist-packages/biotools/analysis/plot.py
/usr/lib/python2.7/dist-packages/biotools/analysis/predict.py
/usr/lib/python2.7/dist-packages/biotools/analysis/renamer.py
/usr/lib/python2.7/dist-packages/biotools/analysis/report.py
/usr/lib/python2.7/dist-packages/biotools/analysis/run.py
/usr/lib/python2.7/dist-packages/biotools/analysis/variance.py
/usr/share/doc/python-biotools/changelog.Debian.gz
/usr/share/doc/python-biotools/copyright

Changelog

2017-03-02 - Andreas Tille <tille@debian.org>
python-biotools (1.2.12-1) unstable; urgency=medium
* Initial release (Closes: #856597)

See Also

Package Description
python-biplist_1.0.2-1_all.deb Python 2 library for reading/writing Mac OS X binary plists
python-bitarray_0.8.1-1build4_i386.deb Python module for efficient boolean array handling
python-bitbucket_0.1-1_all.deb Python bindings for the bitbucket.org REST API
python-bitstring-doc_3.1.5-1_all.deb Python module for manipulation of binary data (documentation)
python-bitstring_3.1.5-1_all.deb Python module for manipulation of binary data (Python 2)
python-bitstruct_3.4.0-1_all.deb Python bit pack/unpack package
python-bittorrent_3.4.2-12_all.deb Scatter-gather network file transfer
python-bjsonrpc_0.2.0-2_all.deb asynchronous bidirectional JSON-RPC protocol over TCP/IP
python-bleach-doc_2.0-1_all.deb whitelist-based HTML-sanitizing library (common documentation)
python-bleach_2.0-1_all.deb whitelist-based HTML-sanitizing library (Python 2)
python-blessed_1.14.1-1_all.deb Thin, practical wrapper around terminal capabilities in Python2
python-blessings_1.6-2build1_all.deb simple but powerful module to manage terminal color and styling (Python 2)
python-blist_1.3.6-4build4_i386.deb List-like type for Python with better asymptotic performance
python-blockdev_2.12-2_all.deb Python 2 gobject-introspection bindings for libblockdev
python-blockdiag_1.5.3+dfsg-5_all.deb generate block-diagram image file from spec-text file
Advertisement
Advertisement