python-biomaj3_3.0.20-1_all.deb


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Description

python-biomaj3 - biological data-bank updater (Python 2)

Property Value
Distribution Ubuntu 17.10 (Artful Aardvark)
Repository Ubuntu Universe i386
Package name python-biomaj3
Package version 3.0.20
Package release 1
Package architecture all
Package type deb
Installed size 346 B
Download size 58.27 KB
Official Mirror archive.ubuntu.com
BioMAJ downloads remote data banks, checks their status and applies
transformation workflows, with consistent state, to provide ready-to-use
data for biologists and bioinformaticians. For example, it can transform
original FASTA files into BLAST indexes. It is very flexible and its
post-processing facilities can be extended very easily.
BioMAJ is a rewrite of BioMAJ, using Mongodb as backend. See wiki for migration.
This package contains the Python 2 module.

Alternatives

Package Version Architecture Repository
python-biomaj3_3.0.20-1_all.deb 3.0.20 all Ubuntu Universe
python-biomaj3 - - -

Requires

Name Value
biomaj3-commons -
python-drmaa -
python-elasticsearch -
python-future -
python-ldap3 -
python-mock -
python-nose -
python-pycurl -
python-pymongo -
python-tabulate -
python:any << 2.8
python:any >= 2.7.5-5~

Download

Type URL
Binary Package python-biomaj3_3.0.20-1_all.deb
Source Package python-biomaj3

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install python-biomaj3 deb package:
    # sudo apt-get install python-biomaj3

Files

Path
/usr/bin/python-biomaj-cli
/usr/lib/python2.7/dist-packages/biomaj/__init__.py
/usr/lib/python2.7/dist-packages/biomaj/bank.py
/usr/lib/python2.7/dist-packages/biomaj/bmajindex.py
/usr/lib/python2.7/dist-packages/biomaj/config.py
/usr/lib/python2.7/dist-packages/biomaj/mimes-bio.txt
/usr/lib/python2.7/dist-packages/biomaj/mongo_connector.py
/usr/lib/python2.7/dist-packages/biomaj/notify.py
/usr/lib/python2.7/dist-packages/biomaj/options.py
/usr/lib/python2.7/dist-packages/biomaj/schema_version.py
/usr/lib/python2.7/dist-packages/biomaj/session.py
/usr/lib/python2.7/dist-packages/biomaj/user.py
/usr/lib/python2.7/dist-packages/biomaj/utils.py
/usr/lib/python2.7/dist-packages/biomaj/workflow.py
/usr/lib/python2.7/dist-packages/biomaj-3.0.20.egg-info/PKG-INFO
/usr/lib/python2.7/dist-packages/biomaj-3.0.20.egg-info/dependency_links.txt
/usr/lib/python2.7/dist-packages/biomaj-3.0.20.egg-info/requires.txt
/usr/lib/python2.7/dist-packages/biomaj-3.0.20.egg-info/top_level.txt
/usr/lib/python2.7/dist-packages/biomaj/download/__init__.py
/usr/lib/python2.7/dist-packages/biomaj/download/direct.py
/usr/lib/python2.7/dist-packages/biomaj/download/downloadthreads.py
/usr/lib/python2.7/dist-packages/biomaj/download/ftp.py
/usr/lib/python2.7/dist-packages/biomaj/download/http.py
/usr/lib/python2.7/dist-packages/biomaj/download/interface.py
/usr/lib/python2.7/dist-packages/biomaj/download/localcopy.py
/usr/lib/python2.7/dist-packages/biomaj/process/__init__.py
/usr/lib/python2.7/dist-packages/biomaj/process/metaprocess.py
/usr/lib/python2.7/dist-packages/biomaj/process/process.py
/usr/lib/python2.7/dist-packages/biomaj/process/processfactory.py
/usr/share/doc/python-biomaj3/README.Debian
/usr/share/doc/python-biomaj3/README.md.gz
/usr/share/doc/python-biomaj3/changelog.Debian.gz
/usr/share/doc/python-biomaj3/copyright

Changelog

2017-01-14 - Olivier Sallou <osallou@debian.org>
python-biomaj3 (3.0.20-1) unstable; urgency=medium
* New package (Closes: # 851366).
This is a rewrite of biomaj software/package. Biomaj v1 is not maintained
anymore and biomaj3  should be used instead.

See Also

Package Description
python-biopython-doc_1.70+dfsg-2build1_all.deb Documentation for the Biopython library
python-biopython-sql_1.70+dfsg-2build1_all.deb Biopython support for the BioSQL database schema (Python 2)
python-biopython_1.70+dfsg-2build1_i386.deb Python library for bioinformatics (implemented in Python 2)
python-biosig_1.3.0-2.2build1_i386.deb Python bindings for BioSig library
python-biotools_1.2.12-1_i386.deb Python bioinformatics utilities for high-throughput genomic sequencing
python-biplist_1.0.2-1_all.deb Python 2 library for reading/writing Mac OS X binary plists
python-bitarray_0.8.1-1build4_i386.deb Python module for efficient boolean array handling
python-bitbucket_0.1-1_all.deb Python bindings for the bitbucket.org REST API
python-bitstring-doc_3.1.5-1_all.deb Python module for manipulation of binary data (documentation)
python-bitstring_3.1.5-1_all.deb Python module for manipulation of binary data (Python 2)
python-bitstruct_3.4.0-1_all.deb Python bit pack/unpack package
python-bittorrent_3.4.2-12_all.deb Scatter-gather network file transfer
python-bjsonrpc_0.2.0-2_all.deb asynchronous bidirectional JSON-RPC protocol over TCP/IP
python-bleach-doc_2.0-1_all.deb whitelist-based HTML-sanitizing library (common documentation)
python-bleach_2.0-1_all.deb whitelist-based HTML-sanitizing library (Python 2)
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